Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0065

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0064 and Rru_A0065 overlap by 4 nucleotidesRru_A0065 and Rru_A0066 are separated by 179 nucleotides Rru_A0064: Rru_A0064 - squalene-phytoene synthase (NCBI), at 72,940 to 75,003 _A0064 Rru_A0065: Rru_A0065 - Squalene/phytoene synthase (NCBI), at 75,000 to 75,893 _A0065 Rru_A0066: Rru_A0066 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 76,073 to 78,394 _A0066 Position (kb) 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.139 kb on - strand, within Rru_A0064at 74.691 kb on - strand, within Rru_A0064at 74.880 kb on + strandat 75.933 kb on - strandat 75.933 kb on - strandat 75.979 kb on - strandat 76.072 kb on + strandat 76.072 kb on + strandat 76.073 kb on - strandat 76.073 kb on - strandat 76.073 kb on - strandat 76.628 kb on - strand, within Rru_A0066

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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74,139 - Rru_A0064 0.58 -1.3
74,691 - Rru_A0064 0.85 +3.2
74,880 + -0.8
75,933 - +1.0
75,933 - -1.4
75,979 - +0.4
76,072 + -1.7
76,072 + -3.5
76,073 - -2.2
76,073 - +1.1
76,073 - +0.6
76,628 - Rru_A0066 0.24 -2.1

Or see this region's nucleotide sequence