Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0063

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0062 and Rru_A0063 are separated by 102 nucleotidesRru_A0063 and Rru_A0064 are separated by 8 nucleotides Rru_A0062: Rru_A0062 - terpene synthase, squalene cyclase (NCBI), at 69,560 to 71,530 _A0062 Rru_A0063: Rru_A0063 - Amine oxidase (NCBI), at 71,633 to 72,931 _A0063 Rru_A0064: Rru_A0064 - squalene-phytoene synthase (NCBI), at 72,940 to 75,003 _A0064 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.560 kb on - strandat 71.560 kb on - strandat 71.560 kb on - strandat 71.560 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.581 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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71,560 - -1.5
71,560 - +2.0
71,560 - +1.8
71,560 - +1.6
71,562 - +1.5
71,562 - -1.0
71,562 - -2.0
71,562 - -1.4
71,581 - +0.7
71,619 - +0.4
71,619 - +0.8
71,619 - +0.7
71,619 - -1.2
71,625 - -0.8

Or see this region's nucleotide sequence