Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0062

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0060 and Rru_A0061 overlap by 15 nucleotidesRru_A0061 and Rru_A0062 are separated by 41 nucleotidesRru_A0062 and Rru_A0063 are separated by 102 nucleotides Rru_A0060: Rru_A0060 - Radical SAM (NCBI), at 67,641 to 68,804 _A0060 Rru_A0061: Rru_A0061 - Purine and other phosphorylases, family 1 (NCBI), at 68,790 to 69,518 _A0061 Rru_A0062: Rru_A0062 - terpene synthase, squalene cyclase (NCBI), at 69,560 to 71,530 _A0062 Rru_A0063: Rru_A0063 - Amine oxidase (NCBI), at 71,633 to 72,931 _A0063 Position (kb) 69 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2 3at 68.802 kb on + strandat 69.068 kb on + strand, within Rru_A0061at 71.560 kb on - strandat 71.560 kb on - strandat 71.560 kb on - strandat 71.560 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.562 kb on - strandat 71.581 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.619 kb on - strandat 71.625 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
68,802 + +2.0
69,068 + Rru_A0061 0.38 +2.8
71,560 - -1.5
71,560 - +2.0
71,560 - +1.8
71,560 - +1.6
71,562 - +1.5
71,562 - -1.0
71,562 - -2.0
71,562 - -1.4
71,581 - +0.7
71,619 - +0.4
71,619 - +0.8
71,619 - +0.7
71,619 - -1.2
71,625 - -0.8

Or see this region's nucleotide sequence