Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0059

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0058 and Rru_A0059 are separated by 406 nucleotidesRru_A0059 and Rru_A0060 are separated by 268 nucleotides Rru_A0058: Rru_A0058 - Dihydrokaempferol 4-reductase (NCBI), at 64,954 to 65,955 _A0058 Rru_A0059: Rru_A0059 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (NCBI), at 66,362 to 67,372 _A0059 Rru_A0060: Rru_A0060 - Radical SAM (NCBI), at 67,641 to 68,804 _A0060 Position (kb) 66 67 68Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 65.532 kb on + strand, within Rru_A0058at 65.628 kb on - strand, within Rru_A0058at 66.042 kb on + strandat 66.063 kb on + strandat 66.063 kb on + strandat 66.065 kb on + strandat 66.065 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 66.193 kb on + strandat 67.347 kb on + strandat 67.370 kb on + strandat 67.583 kb on + strandat 67.583 kb on + strandat 67.626 kb on + strandat 67.626 kb on + strandat 67.626 kb on + strandat 67.626 kb on + strandat 67.626 kb on + strandat 67.628 kb on + strandat 67.628 kb on + strandat 67.628 kb on + strandat 67.628 kb on + strandat 67.628 kb on + strandat 67.628 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
65,532 + Rru_A0058 0.58 -1.4
65,628 - Rru_A0058 0.67 -0.8
66,042 + -0.3
66,063 + -0.8
66,063 + +0.4
66,065 + -0.3
66,065 + -1.1
66,193 + -1.0
66,193 + -3.8
66,193 + +1.9
66,193 + +1.4
66,193 + +1.4
67,347 + -1.7
67,370 + +0.0
67,583 + -3.5
67,583 + +0.0
67,626 + +0.9
67,626 + +0.0
67,626 + +0.6
67,626 + +0.9
67,626 + +0.3
67,628 + +1.9
67,628 + -1.5
67,628 + +2.0
67,628 + +2.2
67,628 + -1.2
67,628 + +2.2

Or see this region's nucleotide sequence