Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0057

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0056 and Rru_A0057 are separated by 165 nucleotidesRru_A0057 and Rru_A0058 are separated by 53 nucleotides Rru_A0056: Rru_A0056 - Toluene tolerance (NCBI), at 61,427 to 62,065 _A0056 Rru_A0057: Rru_A0057 - hypothetical protein (NCBI), at 62,231 to 64,900 _A0057 Rru_A0058: Rru_A0058 - Dihydrokaempferol 4-reductase (NCBI), at 64,954 to 65,955 _A0058 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 61.285 kb on - strandat 61.285 kb on - strandat 61.310 kb on - strandat 61.321 kb on + strandat 61.375 kb on + strandat 61.375 kb on + strandat 65.532 kb on + strand, within Rru_A0058at 65.628 kb on - strand, within Rru_A0058

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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61,285 - +0.4
61,285 - +1.2
61,310 - +0.9
61,321 + -1.7
61,375 + +2.0
61,375 + -2.3
65,532 + Rru_A0058 0.58 -1.4
65,628 - Rru_A0058 0.67 -0.8

Or see this region's nucleotide sequence