Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0038 and Rru_A0039 are separated by 165 nucleotides Rru_A0039 and Rru_A0040 overlap by 4 nucleotides Rru_A0040 and Rru_A0041 are separated by 329 nucleotides
Rru_A0038: Rru_A0038 - Cytochrome c-type biogenesis protein CcmC (NCBI), at 41,257 to 41,976
_A0038
Rru_A0039: Rru_A0039 - Cytochrome c-type biogenesis protein CcmB (NCBI), at 42,142 to 42,810
_A0039
Rru_A0040: Rru_A0040 - Heme exporter protein CcmA (NCBI), at 42,807 to 43,508
_A0040
Rru_A0041: Rru_A0041 - Cytochrome c, class II (NCBI), at 43,838 to 44,293
_A0041
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 42.065 kb on - strand at 42.065 kb on - strand at 42.118 kb on + strand at 43.553 kb on + strand at 43.553 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.748 kb on - strand at 43.748 kb on - strand at 43.748 kb on - strand at 43.836 kb on + strand at 43.836 kb on + strand at 43.839 kb on + strand at 43.839 kb on + strand at 43.840 kb on - strand at 43.840 kb on - strand at 43.962 kb on - strand, within Rru_A0041 at 44.405 kb on + strand at 44.406 kb on - strand at 44.418 kb on - strand at 44.418 kb on - strand at 44.418 kb on - strand at 44.419 kb on + strand at 44.419 kb on + strand at 44.419 kb on + strand at 44.420 kb on - strand at 44.420 kb on - strand at 44.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 42,065 - +0.4 42,065 - +1.4 42,118 + +1.7 43,553 + -2.6 43,553 + -1.5 43,747 + -1.3 43,747 + -0.7 43,747 + -1.2 43,747 + +1.4 43,747 + +2.2 43,747 + +1.1 43,747 + +4.5 43,747 + +0.2 43,747 + +1.1 43,747 + -3.1 43,748 - +0.3 43,748 - +1.1 43,748 - -2.4 43,836 + -0.9 43,836 + -0.2 43,839 + +1.0 43,839 + +2.0 43,840 - +0.0 43,840 - +0.3 43,962 - Rru_A0041 0.27 +0.1 44,405 + -0.3 44,406 - -0.3 44,418 - -2.8 44,418 - +0.0 44,418 - -2.0 44,419 + +0.4 44,419 + -1.8 44,419 + +0.4 44,420 - -2.1 44,420 - -1.7 44,420 - -1.2
Or see this region's nucleotide sequence