Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0037 and Rru_A0038 are separated by 28 nucleotides Rru_A0038 and Rru_A0039 are separated by 165 nucleotides Rru_A0039 and Rru_A0040 overlap by 4 nucleotides
Rru_A0037: Rru_A0037 - Heme exporter protein D (CcmD) (NCBI), at 41,073 to 41,228
_A0037
Rru_A0038: Rru_A0038 - Cytochrome c-type biogenesis protein CcmC (NCBI), at 41,257 to 41,976
_A0038
Rru_A0039: Rru_A0039 - Cytochrome c-type biogenesis protein CcmB (NCBI), at 42,142 to 42,810
_A0039
Rru_A0040: Rru_A0040 - Heme exporter protein CcmA (NCBI), at 42,807 to 43,508
_A0040
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 42.065 kb on - strand at 42.065 kb on - strand at 42.118 kb on + strand at 43.553 kb on + strand at 43.553 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.747 kb on + strand at 43.748 kb on - strand at 43.748 kb on - strand at 43.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 42,065 - +0.4 42,065 - +1.4 42,118 + +1.7 43,553 + -2.6 43,553 + -1.5 43,747 + -1.3 43,747 + -0.7 43,747 + -1.2 43,747 + +1.4 43,747 + +2.2 43,747 + +1.1 43,747 + +4.5 43,747 + +0.2 43,747 + +1.1 43,747 + -3.1 43,748 - +0.3 43,748 - +1.1 43,748 - -2.4
Or see this region's nucleotide sequence