Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0038

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0035 and Rru_A0036 are separated by 85 nucleotidesRru_A0036 and Rru_A0037 are separated by 120 nucleotidesRru_A0037 and Rru_A0038 are separated by 28 nucleotidesRru_A0038 and Rru_A0039 are separated by 165 nucleotidesRru_A0039 and Rru_A0040 overlap by 4 nucleotides Rru_A0035: Rru_A0035 - Cytochrome c-type biogenesis protein CcmF (NCBI), at 38,390 to 40,405 _A0035 Rru_A0036: Rru_A0036 - CcmE/CycJ protein (NCBI), at 40,491 to 40,952 _A0036 Rru_A0037: Rru_A0037 - Heme exporter protein D (CcmD) (NCBI), at 41,073 to 41,228 _A0037 Rru_A0038: Rru_A0038 - Cytochrome c-type biogenesis protein CcmC (NCBI), at 41,257 to 41,976 _A0038 Rru_A0039: Rru_A0039 - Cytochrome c-type biogenesis protein CcmB (NCBI), at 42,142 to 42,810 _A0039 Rru_A0040: Rru_A0040 - Heme exporter protein CcmA (NCBI), at 42,807 to 43,508 _A0040 Position (kb) 41 42Strain fitness (log2 ratio) -1 0 1at 40.413 kb on - strandat 42.065 kb on - strandat 42.065 kb on - strandat 42.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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40,413 - +0.3
42,065 - +0.4
42,065 - +1.4
42,118 + +1.7

Or see this region's nucleotide sequence