Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0035

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0033 and Rru_A0034 overlap by 4 nucleotidesRru_A0034 and Rru_A0035 are separated by 25 nucleotidesRru_A0035 and Rru_A0036 are separated by 85 nucleotidesRru_A0036 and Rru_A0037 are separated by 120 nucleotidesRru_A0037 and Rru_A0038 are separated by 28 nucleotides Rru_A0033: Rru_A0033 - Cytochrome C biogenesis protein (NCBI), at 37,268 to 37,780 _A0033 Rru_A0034: Rru_A0034 - Periplasmic protein thiol-disulfide oxidoreductase DsbE (NCBI), at 37,777 to 38,364 _A0034 Rru_A0035: Rru_A0035 - Cytochrome c-type biogenesis protein CcmF (NCBI), at 38,390 to 40,405 _A0035 Rru_A0036: Rru_A0036 - CcmE/CycJ protein (NCBI), at 40,491 to 40,952 _A0036 Rru_A0037: Rru_A0037 - Heme exporter protein D (CcmD) (NCBI), at 41,073 to 41,228 _A0037 Rru_A0038: Rru_A0038 - Cytochrome c-type biogenesis protein CcmC (NCBI), at 41,257 to 41,976 _A0038 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.304 kb on - strand, within Rru_A0034at 38.304 kb on - strand, within Rru_A0034at 38.391 kb on + strandat 38.392 kb on - strandat 38.392 kb on - strandat 38.392 kb on - strandat 40.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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38,304 - Rru_A0034 0.90 -0.6
38,304 - Rru_A0034 0.90 -2.2
38,391 + -1.6
38,392 - +2.8
38,392 - +1.4
38,392 - +0.2
40,413 - +0.3

Or see this region's nucleotide sequence