Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0034

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0032 and Rru_A0033 overlap by 4 nucleotidesRru_A0033 and Rru_A0034 overlap by 4 nucleotidesRru_A0034 and Rru_A0035 are separated by 25 nucleotides Rru_A0032: Rru_A0032 - TPR repeat (NCBI), at 35,787 to 37,271 _A0032 Rru_A0033: Rru_A0033 - Cytochrome C biogenesis protein (NCBI), at 37,268 to 37,780 _A0033 Rru_A0034: Rru_A0034 - Periplasmic protein thiol-disulfide oxidoreductase DsbE (NCBI), at 37,777 to 38,364 _A0034 Rru_A0035: Rru_A0035 - Cytochrome c-type biogenesis protein CcmF (NCBI), at 38,390 to 40,405 _A0035 Position (kb) 37 38 39Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 36.919 kb on + strand, within Rru_A0032at 36.960 kb on - strand, within Rru_A0032at 37.163 kb on - strandat 38.304 kb on - strand, within Rru_A0034at 38.304 kb on - strand, within Rru_A0034at 38.391 kb on + strandat 38.392 kb on - strandat 38.392 kb on - strandat 38.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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36,919 + Rru_A0032 0.76 -1.6
36,960 - Rru_A0032 0.79 -3.6
37,163 - -1.3
38,304 - Rru_A0034 0.90 -0.6
38,304 - Rru_A0034 0.90 -2.2
38,391 + -1.6
38,392 - +2.8
38,392 - +1.4
38,392 - +0.2

Or see this region's nucleotide sequence