Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0020 and Rru_A0021 overlap by 4 nucleotides Rru_A0021 and Rru_A0022 are separated by 209 nucleotides Rru_A0022 and Rru_A0023 are separated by 170 nucleotides Rru_A0023 and Rru_A0024 are separated by 124 nucleotides
Rru_A0020: Rru_A0020 - Glutathione peroxidase (NCBI), at 25,849 to 26,355
_A0020
Rru_A0021: Rru_A0021 - Transcriptional Regulator, MarR family (NCBI), at 26,352 to 26,888
_A0021
Rru_A0022: Rru_A0022 - Glutathione S-transferase-like (NCBI), at 27,098 to 27,766
_A0022
Rru_A0023: Rru_A0023 - hypothetical protein (NCBI), at 27,937 to 28,329
_A0023
Rru_A0024: Rru_A0024 - peptidase (NCBI), at 28,454 to 29,599
_A0024
Position (kb) 27
28 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 26.099 kb on + strand, within Rru_A0020 at 26.099 kb on + strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.100 kb on - strand, within Rru_A0020 at 26.231 kb on + strand, within Rru_A0020 at 26.231 kb on + strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.232 kb on - strand, within Rru_A0020 at 26.292 kb on - strand, within Rru_A0020 at 26.292 kb on - strand, within Rru_A0020 at 26.342 kb on + strand at 26.708 kb on - strand, within Rru_A0021 at 26.779 kb on + strand, within Rru_A0021 at 26.779 kb on + strand, within Rru_A0021 at 26.930 kb on + strand at 26.930 kb on + strand at 26.930 kb on + strand at 27.022 kb on + strand at 27.023 kb on - strand at 27.023 kb on - strand at 27.764 kb on + strand at 27.765 kb on - strand at 27.765 kb on - strand at 27.843 kb on - strand at 28.048 kb on - strand, within Rru_A0023 at 28.048 kb on - strand, within Rru_A0023 at 28.430 kb on + strand at 28.430 kb on + strand at 28.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 26,099 + Rru_A0020 0.49 -0.4 26,099 + Rru_A0020 0.49 -1.2 26,100 - Rru_A0020 0.50 +2.0 26,100 - Rru_A0020 0.50 -2.8 26,100 - Rru_A0020 0.50 -3.9 26,100 - Rru_A0020 0.50 +1.2 26,100 - Rru_A0020 0.50 +2.0 26,231 + Rru_A0020 0.75 -2.2 26,231 + Rru_A0020 0.75 +0.0 26,232 - Rru_A0020 0.76 -1.4 26,232 - Rru_A0020 0.76 +0.4 26,232 - Rru_A0020 0.76 +1.3 26,232 - Rru_A0020 0.76 -1.6 26,292 - Rru_A0020 0.87 -2.0 26,292 - Rru_A0020 0.87 -1.9 26,342 + +1.2 26,708 - Rru_A0021 0.66 +1.7 26,779 + Rru_A0021 0.80 -0.2 26,779 + Rru_A0021 0.80 -0.8 26,930 + -1.9 26,930 + -2.6 26,930 + -0.5 27,022 + +1.1 27,023 - +2.5 27,023 - +2.0 27,764 + -0.3 27,765 - +0.6 27,765 - +0.4 27,843 - -0.3 28,048 - Rru_A0023 0.28 -1.7 28,048 - Rru_A0023 0.28 -4.0 28,430 + +0.0 28,430 + -1.2 28,431 - -1.5
Or see this region's nucleotide sequence