Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0015

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0014 and Rru_A0015 are separated by 432 nucleotidesRru_A0015 and Rru_AR0001 are separated by 163 nucleotidesRru_AR0001 and Rru_A0016 are separated by 253 nucleotides Rru_A0014: Rru_A0014 - KpsF/GutQ (NCBI), at 14,699 to 15,799 _A0014 Rru_A0015: Rru_A0015 - 3'-5' exonuclease (NCBI), at 16,232 to 16,852 _A0015 Rru_AR0001: Rru_AR0001 - tRNA-Leu (NCBI), at 17,016 to 17,102 _AR0001 Rru_A0016: Rru_A0016 - 3-beta-hydroxy-delta(5)-steroid dehydrogenase (NCBI), at 17,356 to 18,378 _A0016 Position (kb) 16 17Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 15.806 kb on - strandat 15.868 kb on + strandat 15.869 kb on - strandat 15.869 kb on - strandat 15.988 kb on - strandat 16.066 kb on - strandat 16.120 kb on + strandat 16.146 kb on + strandat 16.146 kb on + strandat 17.001 kb on + strandat 17.006 kb on + strandat 17.007 kb on - strandat 17.261 kb on + strandat 17.261 kb on + strandat 17.262 kb on - strandat 17.262 kb on - strandat 17.262 kb on - strandat 17.262 kb on - strandat 17.262 kb on - strandat 17.741 kb on - strand, within Rru_A0016at 17.742 kb on + strand, within Rru_A0016at 17.742 kb on + strand, within Rru_A0016at 17.742 kb on + strand, within Rru_A0016at 17.743 kb on - strand, within Rru_A0016at 17.743 kb on - strand, within Rru_A0016

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
remove
15,806 - +0.4
15,868 + +2.0
15,869 - -2.7
15,869 - -0.8
15,988 - -2.4
16,066 - -1.4
16,120 + +4.1
16,146 + +0.4
16,146 + +2.0
17,001 + +2.0
17,006 + +0.7
17,007 - +0.3
17,261 + +2.0
17,261 + +0.0
17,262 - -1.0
17,262 - +1.5
17,262 - +0.2
17,262 - +2.0
17,262 - -0.9
17,741 - Rru_A0016 0.38 -2.2
17,742 + Rru_A0016 0.38 +0.5
17,742 + Rru_A0016 0.38 +1.1
17,742 + Rru_A0016 0.38 +0.3
17,743 - Rru_A0016 0.38 +2.9
17,743 - Rru_A0016 0.38 -0.3

Or see this region's nucleotide sequence