Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0014

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0012 and Rru_A0013 overlap by 4 nucleotidesRru_A0013 and Rru_A0014 overlap by 4 nucleotidesRru_A0014 and Rru_A0015 are separated by 432 nucleotides Rru_A0012: Rru_A0012 - hypothetical protein (NCBI), at 12,910 to 13,881 _A0012 Rru_A0013: Rru_A0013 - hypothetical protein (NCBI), at 13,878 to 14,702 _A0013 Rru_A0014: Rru_A0014 - KpsF/GutQ (NCBI), at 14,699 to 15,799 _A0014 Rru_A0015: Rru_A0015 - 3'-5' exonuclease (NCBI), at 16,232 to 16,852 _A0015 Position (kb) 14 15 16Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 14.555 kb on - strand, within Rru_A0013at 15.806 kb on - strandat 15.868 kb on + strandat 15.869 kb on - strandat 15.869 kb on - strandat 15.988 kb on - strandat 16.066 kb on - strandat 16.120 kb on + strandat 16.146 kb on + strandat 16.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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14,555 - Rru_A0013 0.82 -0.0
15,806 - +0.4
15,868 + +2.0
15,869 - -2.7
15,869 - -0.8
15,988 - -2.4
16,066 - -1.4
16,120 + +4.1
16,146 + +0.4
16,146 + +2.0

Or see this region's nucleotide sequence