Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0012

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0010 and Rru_A0011 are separated by 17 nucleotidesRru_A0011 and Rru_A0012 overlap by 4 nucleotidesRru_A0012 and Rru_A0013 overlap by 4 nucleotidesRru_A0013 and Rru_A0014 overlap by 4 nucleotides Rru_A0010: Rru_A0010 - Sigma-54 (RpoN) (NCBI), at 10,527 to 12,029 _A0010 Rru_A0011: Rru_A0011 - ABC transporter component (NCBI), at 12,047 to 12,913 _A0011 Rru_A0012: Rru_A0012 - hypothetical protein (NCBI), at 12,910 to 13,881 _A0012 Rru_A0013: Rru_A0013 - hypothetical protein (NCBI), at 13,878 to 14,702 _A0013 Rru_A0014: Rru_A0014 - KpsF/GutQ (NCBI), at 14,699 to 15,799 _A0014 Position (kb) 12 13 14Strain fitness (log2 ratio) -2 -1 0 1at 11.917 kb on + strandat 11.934 kb on - strandat 11.934 kb on - strandat 12.049 kb on - strandat 12.056 kb on - strandat 14.555 kb on - strand, within Rru_A0013

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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11,917 + -0.6
11,934 - -2.7
11,934 - -1.4
12,049 - -0.1
12,056 - +1.0
14,555 - Rru_A0013 0.82 -0.0

Or see this region's nucleotide sequence