Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0011

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0010 and Rru_A0011 are separated by 17 nucleotidesRru_A0011 and Rru_A0012 overlap by 4 nucleotidesRru_A0012 and Rru_A0013 overlap by 4 nucleotides Rru_A0010: Rru_A0010 - Sigma-54 (RpoN) (NCBI), at 10,527 to 12,029 _A0010 Rru_A0011: Rru_A0011 - ABC transporter component (NCBI), at 12,047 to 12,913 _A0011 Rru_A0012: Rru_A0012 - hypothetical protein (NCBI), at 12,910 to 13,881 _A0012 Rru_A0013: Rru_A0013 - hypothetical protein (NCBI), at 13,878 to 14,702 _A0013 Position (kb) 12 13Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 11.246 kb on + strand, within Rru_A0010at 11.246 kb on + strand, within Rru_A0010at 11.247 kb on - strand, within Rru_A0010at 11.247 kb on - strand, within Rru_A0010at 11.247 kb on - strand, within Rru_A0010at 11.504 kb on - strand, within Rru_A0010at 11.784 kb on - strand, within Rru_A0010at 11.917 kb on + strandat 11.934 kb on - strandat 11.934 kb on - strandat 12.049 kb on - strandat 12.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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11,246 + Rru_A0010 0.48 -0.8
11,246 + Rru_A0010 0.48 -2.7
11,247 - Rru_A0010 0.48 -0.3
11,247 - Rru_A0010 0.48 -4.0
11,247 - Rru_A0010 0.48 -2.4
11,504 - Rru_A0010 0.65 -1.2
11,784 - Rru_A0010 0.84 -1.8
11,917 + -0.6
11,934 - -2.7
11,934 - -1.4
12,049 - -0.1
12,056 - +1.0

Or see this region's nucleotide sequence