Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0003

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0002 and Rru_A0003 are separated by 59 nucleotidesRru_A0003 and Rru_A0004 are separated by 64 nucleotides Rru_A0002: Rru_A0002 - DNA-directed DNA polymerase (NCBI), at 1,992 to 3,110 _A0002 Rru_A0003: Rru_A0003 - RecF protein (NCBI), at 3,170 to 4,297 _A0003 Rru_A0004: Rru_A0004 - DNA gyrase, B subunit (NCBI), at 4,362 to 6,770 _A0004 Position (kb) 3 4 5Strain fitness (log2 ratio) -1 0 1 2at 4.290 kb on + strandat 4.295 kb on + strandat 4.295 kb on + strandat 4.295 kb on + strandat 4.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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4,290 + -1.0
4,295 + +2.0
4,295 + +0.1
4,295 + -0.4
4,295 + +0.8

Or see this region's nucleotide sequence