Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0001

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0001 and Rru_A0002 are separated by 234 nucleotides Rru_A0001: Rru_A0001 - chromosomal replication initiator protein, DnaA (NCBI), at 228 to 1,757 _A0001 Rru_A0002: Rru_A0002 - DNA-directed DNA polymerase (NCBI), at 1,992 to 3,110 _A0002 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.231 kb on + strandat 1.890 kb on + strandat 1.890 kb on + strandat 1.890 kb on + strandat 1.890 kb on + strandat 1.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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231 + +0.0
1,890 + -2.5
1,890 + -0.2
1,890 + +1.1
1,890 + +0.0
1,890 + +0.7

Or see this region's nucleotide sequence