Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0042 and Rru_B0043 are separated by 103 nucleotides Rru_B0043 and Rru_B0044 are separated by 59 nucleotides Rru_B0044 and Rru_B0045 are separated by 57 nucleotides
Rru_B0042: Rru_B0042 - hypothetical protein (NCBI), at 42,745 to 43,599
_B0042
Rru_B0043: Rru_B0043 - hypothetical protein (NCBI), at 43,703 to 44,356
_B0043
Rru_B0044: Rru_B0044 - Glycosyl transferase, family 2 (NCBI), at 44,416 to 46,656
_B0044
Rru_B0045: Rru_B0045 - Phosphomannomutase (NCBI), at 46,714 to 48,117
_B0045
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 43.541 kb on + strand at 43.542 kb on - strand at 43.817 kb on - strand, within Rru_B0043 at 44.035 kb on + strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.036 kb on - strand, within Rru_B0043 at 44.109 kb on + strand, within Rru_B0043 at 44.165 kb on + strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.166 kb on - strand, within Rru_B0043 at 44.311 kb on + strand at 44.311 kb on + strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.312 kb on - strand at 44.354 kb on + strand at 44.355 kb on - strand at 44.355 kb on - strand at 44.474 kb on - strand at 44.474 kb on - strand at 44.768 kb on - strand, within Rru_B0044 at 45.391 kb on - strand, within Rru_B0044 at 46.163 kb on - strand, within Rru_B0044 at 46.511 kb on + strand at 46.747 kb on + strand at 46.747 kb on + strand at 46.747 kb on + strand at 46.748 kb on - strand at 46.748 kb on - strand at 46.748 kb on - strand at 46.748 kb on - strand at 46.972 kb on + strand, within Rru_B0045 at 46.973 kb on - strand, within Rru_B0045 at 47.028 kb on + strand, within Rru_B0045 at 47.029 kb on - strand, within Rru_B0045 at 47.368 kb on - strand, within Rru_B0045
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 43,541 + +1.5 43,542 - -1.3 43,817 - Rru_B0043 0.17 -0.5 44,035 + Rru_B0043 0.51 -1.8 44,036 - Rru_B0043 0.51 +0.1 44,036 - Rru_B0043 0.51 -0.5 44,036 - Rru_B0043 0.51 +1.6 44,109 + Rru_B0043 0.62 -1.4 44,165 + Rru_B0043 0.71 +1.2 44,166 - Rru_B0043 0.71 -0.2 44,166 - Rru_B0043 0.71 +2.1 44,166 - Rru_B0043 0.71 +1.3 44,166 - Rru_B0043 0.71 -1.1 44,166 - Rru_B0043 0.71 -0.9 44,166 - Rru_B0043 0.71 +3.1 44,311 + +2.7 44,311 + -0.4 44,312 - -0.2 44,312 - -0.9 44,312 - +2.2 44,312 - -0.7 44,354 + +0.3 44,355 - +0.1 44,355 - +1.1 44,474 - -0.9 44,474 - +0.4 44,768 - Rru_B0044 0.16 +3.7 45,391 - Rru_B0044 0.44 +1.1 46,163 - Rru_B0044 0.78 +4.1 46,511 + +1.1 46,747 + +1.5 46,747 + +0.9 46,747 + +1.1 46,748 - +0.7 46,748 - +0.6 46,748 - +0.1 46,748 - +2.6 46,972 + Rru_B0045 0.18 -0.0 46,973 - Rru_B0045 0.18 +1.5 47,028 + Rru_B0045 0.22 -0.8 47,029 - Rru_B0045 0.22 +2.9 47,368 - Rru_B0045 0.47 +1.5
Or see this region's nucleotide sequence