Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0035

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0033 and Rru_B0034 are separated by 118 nucleotidesRru_B0034 and Rru_B0035 overlap by 4 nucleotidesRru_B0035 and Rru_B0036 are separated by 28 nucleotides Rru_B0033: Rru_B0033 - hypothetical protein (NCBI), at 32,481 to 33,188 _B0033 Rru_B0034: Rru_B0034 - hypothetical protein (NCBI), at 33,307 to 33,534 _B0034 Rru_B0035: Rru_B0035 - Death-on-curing protein (NCBI), at 33,531 to 33,917 _B0035 Rru_B0036: Rru_B0036 - hypothetical protein (NCBI), at 33,946 to 35,112 _B0036 Position (kb) 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 32.711 kb on - strand, within Rru_B0033at 32.711 kb on - strand, within Rru_B0033at 32.764 kb on + strand, within Rru_B0033at 32.819 kb on + strand, within Rru_B0033at 32.819 kb on + strand, within Rru_B0033at 32.820 kb on - strand, within Rru_B0033at 32.820 kb on - strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.828 kb on + strand, within Rru_B0033at 32.829 kb on - strand, within Rru_B0033at 32.830 kb on + strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.831 kb on - strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.851 kb on + strand, within Rru_B0033at 32.852 kb on - strand, within Rru_B0033at 32.852 kb on - strand, within Rru_B0033at 32.867 kb on + strand, within Rru_B0033at 32.867 kb on + strand, within Rru_B0033at 32.868 kb on - strand, within Rru_B0033at 32.868 kb on - strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.869 kb on + strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.870 kb on - strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.881 kb on + strand, within Rru_B0033at 32.882 kb on - strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.929 kb on + strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 32.930 kb on - strand, within Rru_B0033at 33.028 kb on + strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.029 kb on - strand, within Rru_B0033at 33.201 kb on - strandat 33.247 kb on + strandat 33.248 kb on - strandat 33.271 kb on + strandat 33.273 kb on + strandat 33.275 kb on + strandat 33.275 kb on + strandat 33.275 kb on + strandat 33.276 kb on - strandat 33.276 kb on - strandat 33.276 kb on - strandat 33.278 kb on + strandat 33.285 kb on + strandat 33.286 kb on - strandat 33.287 kb on + strandat 33.288 kb on - strandat 33.568 kb on - strandat 33.672 kb on + strand, within Rru_B0035at 33.672 kb on + strand, within Rru_B0035at 33.672 kb on + strand, within Rru_B0035at 33.672 kb on + strand, within Rru_B0035at 33.673 kb on - strand, within Rru_B0035at 33.673 kb on - strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.674 kb on + strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.675 kb on - strand, within Rru_B0035at 33.708 kb on + strand, within Rru_B0035at 33.708 kb on + strand, within Rru_B0035at 33.708 kb on + strand, within Rru_B0035at 33.709 kb on - strand, within Rru_B0035at 33.709 kb on - strand, within Rru_B0035at 33.709 kb on - strand, within Rru_B0035at 33.709 kb on - strand, within Rru_B0035at 33.714 kb on + strand, within Rru_B0035at 33.714 kb on + strand, within Rru_B0035at 33.714 kb on + strand, within Rru_B0035at 33.715 kb on - strand, within Rru_B0035at 33.715 kb on - strand, within Rru_B0035at 33.715 kb on - strand, within Rru_B0035at 33.715 kb on - strand, within Rru_B0035at 33.863 kb on + strand, within Rru_B0035at 33.863 kb on + strand, within Rru_B0035at 33.863 kb on + strand, within Rru_B0035at 33.863 kb on + strand, within Rru_B0035at 33.863 kb on + strand, within Rru_B0035at 33.864 kb on - strand, within Rru_B0035at 33.864 kb on - strand, within Rru_B0035at 33.864 kb on - strand, within Rru_B0035at 33.928 kb on + strandat 33.928 kb on + strandat 33.928 kb on + strandat 33.929 kb on - strandat 33.929 kb on - strandat 33.930 kb on + strandat 33.930 kb on + strandat 33.930 kb on + strandat 33.931 kb on - strandat 33.931 kb on - strandat 33.931 kb on - strandat 34.001 kb on + strandat 34.001 kb on + strandat 34.001 kb on + strandat 34.001 kb on + strandat 34.001 kb on + strandat 34.002 kb on - strandat 34.002 kb on - strandat 34.002 kb on - strandat 34.002 kb on - strandat 34.002 kb on - strandat 34.002 kb on - strandat 34.092 kb on + strand, within Rru_B0036at 34.092 kb on + strand, within Rru_B0036at 34.092 kb on + strand, within Rru_B0036at 34.093 kb on - strand, within Rru_B0036at 34.121 kb on + strand, within Rru_B0036at 34.121 kb on + strand, within Rru_B0036at 34.121 kb on + strand, within Rru_B0036at 34.455 kb on + strand, within Rru_B0036at 34.456 kb on - strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.512 kb on + strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.513 kb on - strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.514 kb on + strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.515 kb on - strand, within Rru_B0036at 34.607 kb on + strand, within Rru_B0036at 34.625 kb on + strand, within Rru_B0036at 34.746 kb on + strand, within Rru_B0036at 34.746 kb on + strand, within Rru_B0036at 34.746 kb on + strand, within Rru_B0036at 34.747 kb on - strand, within Rru_B0036at 34.747 kb on - strand, within Rru_B0036at 34.747 kb on - strand, within Rru_B0036at 34.747 kb on - strand, within Rru_B0036at 34.748 kb on + strand, within Rru_B0036at 34.748 kb on + strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.749 kb on - strand, within Rru_B0036at 34.781 kb on + strand, within Rru_B0036at 34.781 kb on + strand, within Rru_B0036at 34.782 kb on - strand, within Rru_B0036

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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32,711 - Rru_B0033 0.32 -2.4
32,711 - Rru_B0033 0.32 -0.1
32,764 + Rru_B0033 0.40 -0.2
32,819 + Rru_B0033 0.48 -0.8
32,819 + Rru_B0033 0.48 +0.1
32,820 - Rru_B0033 0.48 +1.6
32,820 - Rru_B0033 0.48 -0.4
32,828 + Rru_B0033 0.49 +0.1
32,828 + Rru_B0033 0.49 +1.2
32,828 + Rru_B0033 0.49 +0.5
32,829 - Rru_B0033 0.49 -0.0
32,830 + Rru_B0033 0.49 +1.5
32,831 - Rru_B0033 0.49 +1.9
32,831 - Rru_B0033 0.49 -1.2
32,831 - Rru_B0033 0.49 +0.7
32,831 - Rru_B0033 0.49 -0.6
32,831 - Rru_B0033 0.49 +0.3
32,851 + Rru_B0033 0.52 -2.5
32,851 + Rru_B0033 0.52 -0.7
32,851 + Rru_B0033 0.52 -2.2
32,852 - Rru_B0033 0.52 +0.9
32,852 - Rru_B0033 0.52 -1.2
32,867 + Rru_B0033 0.55 -3.3
32,867 + Rru_B0033 0.55 +1.2
32,868 - Rru_B0033 0.55 -0.5
32,868 - Rru_B0033 0.55 -3.0
32,869 + Rru_B0033 0.55 -1.4
32,869 + Rru_B0033 0.55 -1.9
32,869 + Rru_B0033 0.55 +0.9
32,869 + Rru_B0033 0.55 -2.5
32,869 + Rru_B0033 0.55 -1.0
32,870 - Rru_B0033 0.55 +1.5
32,870 - Rru_B0033 0.55 -0.9
32,870 - Rru_B0033 0.55 +0.8
32,870 - Rru_B0033 0.55 -1.9
32,881 + Rru_B0033 0.56 +1.6
32,881 + Rru_B0033 0.56 -0.5
32,881 + Rru_B0033 0.56 -1.4
32,881 + Rru_B0033 0.56 -0.4
32,881 + Rru_B0033 0.56 +0.1
32,881 + Rru_B0033 0.56 -2.3
32,882 - Rru_B0033 0.57 +2.3
32,929 + Rru_B0033 0.63 -2.0
32,929 + Rru_B0033 0.63 -1.1
32,929 + Rru_B0033 0.63 -2.9
32,930 - Rru_B0033 0.63 +0.4
32,930 - Rru_B0033 0.63 -3.5
32,930 - Rru_B0033 0.63 -0.3
32,930 - Rru_B0033 0.63 -2.0
32,930 - Rru_B0033 0.63 -1.1
33,028 + Rru_B0033 0.77 +0.7
33,029 - Rru_B0033 0.77 -1.9
33,029 - Rru_B0033 0.77 -1.7
33,029 - Rru_B0033 0.77 -0.6
33,029 - Rru_B0033 0.77 -1.8
33,029 - Rru_B0033 0.77 -0.1
33,201 - -0.5
33,247 + +0.9
33,248 - +1.4
33,271 + +0.3
33,273 + -0.0
33,275 + -1.9
33,275 + +0.1
33,275 + +0.1
33,276 - -0.6
33,276 - +1.5
33,276 - +1.1
33,278 + +0.3
33,285 + +1.9
33,286 - -1.4
33,287 + -1.1
33,288 - -0.4
33,568 - +1.3
33,672 + Rru_B0035 0.36 -0.1
33,672 + Rru_B0035 0.36 -2.2
33,672 + Rru_B0035 0.36 -0.8
33,672 + Rru_B0035 0.36 +0.1
33,673 - Rru_B0035 0.37 -1.9
33,673 - Rru_B0035 0.37 -0.8
33,674 + Rru_B0035 0.37 -1.1
33,674 + Rru_B0035 0.37 -2.2
33,674 + Rru_B0035 0.37 -2.1
33,674 + Rru_B0035 0.37 -0.8
33,674 + Rru_B0035 0.37 -1.7
33,674 + Rru_B0035 0.37 -0.9
33,675 - Rru_B0035 0.37 +1.2
33,675 - Rru_B0035 0.37 -3.5
33,675 - Rru_B0035 0.37 -1.1
33,675 - Rru_B0035 0.37 -0.9
33,675 - Rru_B0035 0.37 +1.6
33,675 - Rru_B0035 0.37 +0.8
33,675 - Rru_B0035 0.37 +1.2
33,675 - Rru_B0035 0.37 -2.2
33,675 - Rru_B0035 0.37 +0.6
33,675 - Rru_B0035 0.37 -1.6
33,675 - Rru_B0035 0.37 -0.2
33,708 + Rru_B0035 0.46 -1.1
33,708 + Rru_B0035 0.46 -0.9
33,708 + Rru_B0035 0.46 +1.9
33,709 - Rru_B0035 0.46 +1.4
33,709 - Rru_B0035 0.46 -1.2
33,709 - Rru_B0035 0.46 -0.8
33,709 - Rru_B0035 0.46 +0.3
33,714 + Rru_B0035 0.47 +0.1
33,714 + Rru_B0035 0.47 -0.4
33,714 + Rru_B0035 0.47 +0.5
33,715 - Rru_B0035 0.48 -2.7
33,715 - Rru_B0035 0.48 -1.2
33,715 - Rru_B0035 0.48 -1.9
33,715 - Rru_B0035 0.48 +0.8
33,863 + Rru_B0035 0.86 -2.6
33,863 + Rru_B0035 0.86 +1.7
33,863 + Rru_B0035 0.86 +1.5
33,863 + Rru_B0035 0.86 -0.5
33,863 + Rru_B0035 0.86 +0.5
33,864 - Rru_B0035 0.86 -0.4
33,864 - Rru_B0035 0.86 -0.1
33,864 - Rru_B0035 0.86 +0.5
33,928 + +0.7
33,928 + -3.1
33,928 + -0.8
33,929 - +0.1
33,929 - +0.9
33,930 + -0.8
33,930 + +0.4
33,930 + -2.0
33,931 - -2.5
33,931 - +2.0
33,931 - -2.5
34,001 + +0.2
34,001 + -0.1
34,001 + -0.4
34,001 + -0.0
34,001 + -0.1
34,002 - -0.6
34,002 - +0.6
34,002 - -1.9
34,002 - -2.9
34,002 - +0.3
34,002 - +1.4
34,092 + Rru_B0036 0.13 -0.8
34,092 + Rru_B0036 0.13 -2.0
34,092 + Rru_B0036 0.13 +3.1
34,093 - Rru_B0036 0.13 -0.1
34,121 + Rru_B0036 0.15 -2.6
34,121 + Rru_B0036 0.15 +0.4
34,121 + Rru_B0036 0.15 +2.8
34,455 + Rru_B0036 0.44 +0.6
34,456 - Rru_B0036 0.44 +0.5
34,512 + Rru_B0036 0.49 +0.8
34,512 + Rru_B0036 0.49 +1.3
34,512 + Rru_B0036 0.49 -0.7
34,512 + Rru_B0036 0.49 -0.4
34,512 + Rru_B0036 0.49 +5.1
34,512 + Rru_B0036 0.49 +1.1
34,512 + Rru_B0036 0.49 -1.3
34,512 + Rru_B0036 0.49 -1.1
34,512 + Rru_B0036 0.49 +0.1
34,512 + Rru_B0036 0.49 -2.4
34,512 + Rru_B0036 0.49 +0.3
34,512 + Rru_B0036 0.49 +2.1
34,512 + Rru_B0036 0.49 +0.7
34,512 + Rru_B0036 0.49 -0.8
34,512 + Rru_B0036 0.49 +0.1
34,512 + Rru_B0036 0.49 -1.5
34,512 + Rru_B0036 0.49 -0.5
34,512 + Rru_B0036 0.49 -1.8
34,512 + Rru_B0036 0.49 -2.1
34,512 + Rru_B0036 0.49 -0.2
34,512 + Rru_B0036 0.49 -0.0
34,513 - Rru_B0036 0.49 +0.1
34,513 - Rru_B0036 0.49 +1.1
34,513 - Rru_B0036 0.49 -3.1
34,513 - Rru_B0036 0.49 -0.6
34,513 - Rru_B0036 0.49 +2.1
34,513 - Rru_B0036 0.49 -0.0
34,513 - Rru_B0036 0.49 -1.5
34,513 - Rru_B0036 0.49 -0.1
34,513 - Rru_B0036 0.49 -2.5
34,513 - Rru_B0036 0.49 +3.1
34,513 - Rru_B0036 0.49 -0.9
34,513 - Rru_B0036 0.49 -0.1
34,513 - Rru_B0036 0.49 +0.4
34,513 - Rru_B0036 0.49 -1.1
34,513 - Rru_B0036 0.49 -0.7
34,513 - Rru_B0036 0.49 +0.3
34,513 - Rru_B0036 0.49 +1.7
34,513 - Rru_B0036 0.49 -0.2
34,513 - Rru_B0036 0.49 -1.5
34,514 + Rru_B0036 0.49 +3.2
34,514 + Rru_B0036 0.49 -2.5
34,514 + Rru_B0036 0.49 -1.2
34,514 + Rru_B0036 0.49 -2.3
34,514 + Rru_B0036 0.49 -1.9
34,514 + Rru_B0036 0.49 +0.3
34,515 - Rru_B0036 0.49 +0.1
34,515 - Rru_B0036 0.49 +0.6
34,515 - Rru_B0036 0.49 -2.5
34,515 - Rru_B0036 0.49 -1.0
34,515 - Rru_B0036 0.49 +0.4
34,515 - Rru_B0036 0.49 -0.7
34,607 + Rru_B0036 0.57 +1.3
34,625 + Rru_B0036 0.58 +2.1
34,746 + Rru_B0036 0.69 +1.7
34,746 + Rru_B0036 0.69 -0.7
34,746 + Rru_B0036 0.69 +2.4
34,747 - Rru_B0036 0.69 +1.6
34,747 - Rru_B0036 0.69 -0.2
34,747 - Rru_B0036 0.69 -0.5
34,747 - Rru_B0036 0.69 +0.5
34,748 + Rru_B0036 0.69 +0.6
34,748 + Rru_B0036 0.69 -2.0
34,749 - Rru_B0036 0.69 -0.2
34,749 - Rru_B0036 0.69 -0.9
34,749 - Rru_B0036 0.69 -0.4
34,749 - Rru_B0036 0.69 +0.8
34,749 - Rru_B0036 0.69 -1.3
34,749 - Rru_B0036 0.69 -0.2
34,749 - Rru_B0036 0.69 +0.1
34,749 - Rru_B0036 0.69 -0.7
34,781 + Rru_B0036 0.72 +0.6
34,781 + Rru_B0036 0.72 -1.4
34,782 - Rru_B0036 0.72 +0.8

Or see this region's nucleotide sequence