Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0029

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0028 and Rru_B0029 are separated by 13 nucleotidesRru_B0029 and Rru_B0030 are separated by 322 nucleotides Rru_B0028: Rru_B0028 - ABC transporter related (NCBI), at 26,248 to 27,666 _B0028 Rru_B0029: Rru_B0029 - Plasmid encoded RepA protein (NCBI), at 27,680 to 28,666 _B0029 Rru_B0030: Rru_B0030 - Hemolysin-type calcium-binding region (NCBI), at 28,989 to 30,377 _B0030 Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 26.975 kb on - strand, within Rru_B0028at 27.461 kb on - strand, within Rru_B0028at 27.677 kb on + strandat 27.677 kb on + strandat 27.677 kb on + strandat 27.678 kb on - strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.718 kb on + strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.719 kb on - strandat 27.776 kb on - strandat 27.857 kb on + strand, within Rru_B0029at 27.858 kb on - strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.987 kb on + strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.988 kb on - strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.991 kb on + strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 27.992 kb on - strand, within Rru_B0029at 28.106 kb on + strand, within Rru_B0029at 28.168 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.260 kb on + strand, within Rru_B0029at 28.365 kb on + strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.366 kb on - strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.395 kb on + strand, within Rru_B0029at 28.531 kb on + strand, within Rru_B0029at 28.678 kb on - strandat 28.678 kb on - strandat 28.748 kb on - strandat 28.754 kb on + strandat 28.758 kb on + strandat 28.758 kb on + strandat 28.759 kb on - strandat 28.772 kb on + strandat 28.772 kb on + strandat 28.773 kb on - strandat 28.788 kb on + strandat 28.788 kb on + strandat 28.821 kb on + strandat 28.920 kb on + strandat 28.921 kb on - strandat 28.990 kb on + strandat 28.991 kb on - strandat 29.095 kb on + strandat 29.095 kb on + strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.096 kb on - strandat 29.194 kb on + strand, within Rru_B0030at 29.194 kb on + strand, within Rru_B0030at 29.194 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.239 kb on + strand, within Rru_B0030at 29.240 kb on - strand, within Rru_B0030at 29.240 kb on - strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.252 kb on + strand, within Rru_B0030at 29.253 kb on - strand, within Rru_B0030at 29.361 kb on - strand, within Rru_B0030at 29.653 kb on - strand, within Rru_B0030

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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26,975 - Rru_B0028 0.51 -0.1
27,461 - Rru_B0028 0.85 +0.8
27,677 + +1.6
27,677 + +0.6
27,677 + +2.1
27,678 - +1.4
27,718 + -0.1
27,718 + +0.4
27,718 + -1.0
27,718 + +1.1
27,719 - -2.3
27,719 - -0.7
27,719 - +1.0
27,776 - +0.7
27,857 + Rru_B0029 0.18 -1.5
27,858 - Rru_B0029 0.18 +0.5
27,987 + Rru_B0029 0.31 -1.8
27,987 + Rru_B0029 0.31 +5.3
27,987 + Rru_B0029 0.31 -2.5
27,987 + Rru_B0029 0.31 -1.3
27,987 + Rru_B0029 0.31 +0.6
27,987 + Rru_B0029 0.31 -0.9
27,987 + Rru_B0029 0.31 -0.6
27,987 + Rru_B0029 0.31 -0.6
27,987 + Rru_B0029 0.31 +2.1
27,987 + Rru_B0029 0.31 -2.4
27,987 + Rru_B0029 0.31 +1.6
27,987 + Rru_B0029 0.31 +2.4
27,988 - Rru_B0029 0.31 +2.6
27,988 - Rru_B0029 0.31 -1.4
27,988 - Rru_B0029 0.31 +1.1
27,988 - Rru_B0029 0.31 +1.5
27,988 - Rru_B0029 0.31 -0.5
27,988 - Rru_B0029 0.31 +0.2
27,988 - Rru_B0029 0.31 +0.5
27,988 - Rru_B0029 0.31 -1.4
27,988 - Rru_B0029 0.31 -1.7
27,988 - Rru_B0029 0.31 -1.6
27,988 - Rru_B0029 0.31 -0.0
27,988 - Rru_B0029 0.31 -1.5
27,988 - Rru_B0029 0.31 -4.1
27,988 - Rru_B0029 0.31 +2.4
27,988 - Rru_B0029 0.31 -0.8
27,988 - Rru_B0029 0.31 -2.7
27,988 - Rru_B0029 0.31 +1.4
27,988 - Rru_B0029 0.31 +2.4
27,988 - Rru_B0029 0.31 +1.7
27,991 + Rru_B0029 0.32 +1.5
27,991 + Rru_B0029 0.32 +1.4
27,991 + Rru_B0029 0.32 -0.6
27,991 + Rru_B0029 0.32 +1.3
27,992 - Rru_B0029 0.32 +1.5
27,992 - Rru_B0029 0.32 +0.2
27,992 - Rru_B0029 0.32 -0.2
27,992 - Rru_B0029 0.32 -2.1
27,992 - Rru_B0029 0.32 +3.1
27,992 - Rru_B0029 0.32 -1.4
27,992 - Rru_B0029 0.32 +1.1
28,106 + Rru_B0029 0.43 -0.6
28,168 + Rru_B0029 0.49 +0.3
28,260 + Rru_B0029 0.59 +1.5
28,260 + Rru_B0029 0.59 -0.1
28,260 + Rru_B0029 0.59 -0.4
28,365 + Rru_B0029 0.69 +0.3
28,366 - Rru_B0029 0.70 -0.7
28,366 - Rru_B0029 0.70 +0.3
28,395 + Rru_B0029 0.72 -0.5
28,395 + Rru_B0029 0.72 -0.9
28,531 + Rru_B0029 0.86 +0.6
28,678 - -0.4
28,678 - -1.9
28,748 - -1.9
28,754 + -1.5
28,758 + -1.6
28,758 + +2.1
28,759 - -0.6
28,772 + -0.9
28,772 + -0.7
28,773 - +1.1
28,788 + -0.8
28,788 + -2.3
28,821 + +1.6
28,920 + +1.7
28,921 - +0.5
28,990 + +2.1
28,991 - -1.8
29,095 + +5.4
29,095 + -0.6
29,096 - -1.4
29,096 - -2.3
29,096 - -3.6
29,096 - -1.1
29,194 + Rru_B0030 0.15 -0.1
29,194 + Rru_B0030 0.15 -1.4
29,194 + Rru_B0030 0.15 +3.1
29,239 + Rru_B0030 0.18 -0.6
29,239 + Rru_B0030 0.18 +2.1
29,239 + Rru_B0030 0.18 +2.7
29,239 + Rru_B0030 0.18 +1.1
29,239 + Rru_B0030 0.18 +0.1
29,239 + Rru_B0030 0.18 -0.5
29,240 - Rru_B0030 0.18 -1.4
29,240 - Rru_B0030 0.18 -0.4
29,252 + Rru_B0030 0.19 -0.9
29,252 + Rru_B0030 0.19 +0.3
29,252 + Rru_B0030 0.19 +1.1
29,253 - Rru_B0030 0.19 -0.6
29,361 - Rru_B0030 0.27 +0.3
29,653 - Rru_B0030 0.48 -1.5

Or see this region's nucleotide sequence