Experiment: carbon source anaerobic Succinic Acid 31.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_B0013 and Rru_B0014 are separated by 0 nucleotides Rru_B0014 and Rru_B0015 are separated by 27 nucleotides Rru_B0015 and Rru_B0016 are separated by 166 nucleotides
Rru_B0013: Rru_B0013 - hypothetical protein (NCBI), at 13,859 to 14,095
_B0013
Rru_B0014: Rru_B0014 - Transposase, mutator type (NCBI), at 14,096 to 15,022
_B0014
Rru_B0015: Rru_B0015 - putative fragment of transposase protein (NCBI), at 15,050 to 15,301
_B0015
Rru_B0016: Rru_B0016 - Phage integrase (NCBI), at 15,468 to 16,091
_B0016
Position (kb)
15
16 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 14.050 kb on - strand, within Rru_B0013 at 14.050 kb on - strand, within Rru_B0013 at 14.050 kb on - strand, within Rru_B0013 at 14.050 kb on - strand, within Rru_B0013 at 15.442 kb on + strand at 15.442 kb on + strand at 15.442 kb on + strand at 15.442 kb on + strand at 15.516 kb on + strand at 15.516 kb on + strand at 15.517 kb on - strand at 15.546 kb on - strand, within Rru_B0016 at 15.546 kb on - strand, within Rru_B0016 at 15.609 kb on + strand, within Rru_B0016 at 15.610 kb on - strand, within Rru_B0016 at 15.786 kb on + strand, within Rru_B0016 at 15.786 kb on + strand, within Rru_B0016 at 15.787 kb on - strand, within Rru_B0016 at 15.787 kb on - strand, within Rru_B0016 at 15.787 kb on - strand, within Rru_B0016 at 15.960 kb on + strand, within Rru_B0016 at 15.961 kb on - strand, within Rru_B0016 at 15.961 kb on - strand, within Rru_B0016 at 15.977 kb on - strand, within Rru_B0016 at 15.978 kb on + strand, within Rru_B0016 at 15.978 kb on + strand, within Rru_B0016 at 15.985 kb on + strand, within Rru_B0016 at 15.985 kb on + strand, within Rru_B0016 at 15.985 kb on + strand, within Rru_B0016 at 15.985 kb on + strand, within Rru_B0016 at 15.985 kb on + strand, within Rru_B0016 at 15.986 kb on - strand, within Rru_B0016 at 15.995 kb on + strand, within Rru_B0016 at 16.093 kb on - strand at 16.093 kb on - strand at 16.094 kb on + strand at 16.094 kb on + strand at 16.094 kb on + strand at 16.095 kb on - strand at 16.096 kb on + strand at 16.096 kb on + strand at 16.096 kb on + strand at 16.096 kb on + strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.097 kb on - strand at 16.129 kb on + strand at 16.129 kb on + strand at 16.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM remove 14,050 - Rru_B0013 0.81 -0.1 14,050 - Rru_B0013 0.81 +0.6 14,050 - Rru_B0013 0.81 +4.7 14,050 - Rru_B0013 0.81 +1.9 15,442 + -2.8 15,442 + +3.1 15,442 + -0.4 15,442 + -0.9 15,516 + -1.8 15,516 + +0.6 15,517 - -0.4 15,546 - Rru_B0016 0.12 -0.4 15,546 - Rru_B0016 0.12 +1.1 15,609 + Rru_B0016 0.23 -0.2 15,610 - Rru_B0016 0.23 -0.5 15,786 + Rru_B0016 0.51 +2.4 15,786 + Rru_B0016 0.51 -0.4 15,787 - Rru_B0016 0.51 -1.4 15,787 - Rru_B0016 0.51 -0.1 15,787 - Rru_B0016 0.51 -0.4 15,960 + Rru_B0016 0.79 +0.1 15,961 - Rru_B0016 0.79 -1.3 15,961 - Rru_B0016 0.79 +3.1 15,977 - Rru_B0016 0.82 -1.3 15,978 + Rru_B0016 0.82 -2.5 15,978 + Rru_B0016 0.82 -0.9 15,985 + Rru_B0016 0.83 -1.7 15,985 + Rru_B0016 0.83 -0.2 15,985 + Rru_B0016 0.83 +0.4 15,985 + Rru_B0016 0.83 -1.3 15,985 + Rru_B0016 0.83 -1.9 15,986 - Rru_B0016 0.83 -2.1 15,995 + Rru_B0016 0.84 -1.0 16,093 - +0.6 16,093 - +2.8 16,094 + -1.2 16,094 + -1.9 16,094 + -1.4 16,095 - -0.7 16,096 + -2.2 16,096 + +0.8 16,096 + +0.3 16,096 + -1.6 16,097 - -1.2 16,097 - -1.4 16,097 - +0.2 16,097 - +1.1 16,097 - -0.4 16,097 - -1.4 16,097 - -0.3 16,097 - -1.1 16,097 - -0.5 16,097 - -2.3 16,129 + -0.0 16,129 + +0.3 16,231 - -0.3
Or see this region's nucleotide sequence