Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0015

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0013 and Rru_B0014 are separated by 0 nucleotidesRru_B0014 and Rru_B0015 are separated by 27 nucleotidesRru_B0015 and Rru_B0016 are separated by 166 nucleotides Rru_B0013: Rru_B0013 - hypothetical protein (NCBI), at 13,859 to 14,095 _B0013 Rru_B0014: Rru_B0014 - Transposase, mutator type (NCBI), at 14,096 to 15,022 _B0014 Rru_B0015: Rru_B0015 - putative fragment of transposase protein (NCBI), at 15,050 to 15,301 _B0015 Rru_B0016: Rru_B0016 - Phage integrase (NCBI), at 15,468 to 16,091 _B0016 Position (kb) 15 16Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 14.050 kb on - strand, within Rru_B0013at 14.050 kb on - strand, within Rru_B0013at 14.050 kb on - strand, within Rru_B0013at 14.050 kb on - strand, within Rru_B0013at 15.442 kb on + strandat 15.442 kb on + strandat 15.442 kb on + strandat 15.442 kb on + strandat 15.516 kb on + strandat 15.516 kb on + strandat 15.517 kb on - strandat 15.546 kb on - strand, within Rru_B0016at 15.546 kb on - strand, within Rru_B0016at 15.609 kb on + strand, within Rru_B0016at 15.610 kb on - strand, within Rru_B0016at 15.786 kb on + strand, within Rru_B0016at 15.786 kb on + strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.787 kb on - strand, within Rru_B0016at 15.960 kb on + strand, within Rru_B0016at 15.961 kb on - strand, within Rru_B0016at 15.961 kb on - strand, within Rru_B0016at 15.977 kb on - strand, within Rru_B0016at 15.978 kb on + strand, within Rru_B0016at 15.978 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.985 kb on + strand, within Rru_B0016at 15.986 kb on - strand, within Rru_B0016at 15.995 kb on + strand, within Rru_B0016at 16.093 kb on - strandat 16.093 kb on - strandat 16.094 kb on + strandat 16.094 kb on + strandat 16.094 kb on + strandat 16.095 kb on - strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.096 kb on + strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.097 kb on - strandat 16.129 kb on + strandat 16.129 kb on + strandat 16.231 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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14,050 - Rru_B0013 0.81 -0.1
14,050 - Rru_B0013 0.81 +0.6
14,050 - Rru_B0013 0.81 +4.7
14,050 - Rru_B0013 0.81 +1.9
15,442 + -2.8
15,442 + +3.1
15,442 + -0.4
15,442 + -0.9
15,516 + -1.8
15,516 + +0.6
15,517 - -0.4
15,546 - Rru_B0016 0.12 -0.4
15,546 - Rru_B0016 0.12 +1.1
15,609 + Rru_B0016 0.23 -0.2
15,610 - Rru_B0016 0.23 -0.5
15,786 + Rru_B0016 0.51 +2.4
15,786 + Rru_B0016 0.51 -0.4
15,787 - Rru_B0016 0.51 -1.4
15,787 - Rru_B0016 0.51 -0.1
15,787 - Rru_B0016 0.51 -0.4
15,960 + Rru_B0016 0.79 +0.1
15,961 - Rru_B0016 0.79 -1.3
15,961 - Rru_B0016 0.79 +3.1
15,977 - Rru_B0016 0.82 -1.3
15,978 + Rru_B0016 0.82 -2.5
15,978 + Rru_B0016 0.82 -0.9
15,985 + Rru_B0016 0.83 -1.7
15,985 + Rru_B0016 0.83 -0.2
15,985 + Rru_B0016 0.83 +0.4
15,985 + Rru_B0016 0.83 -1.3
15,985 + Rru_B0016 0.83 -1.9
15,986 - Rru_B0016 0.83 -2.1
15,995 + Rru_B0016 0.84 -1.0
16,093 - +0.6
16,093 - +2.8
16,094 + -1.2
16,094 + -1.9
16,094 + -1.4
16,095 - -0.7
16,096 + -2.2
16,096 + +0.8
16,096 + +0.3
16,096 + -1.6
16,097 - -1.2
16,097 - -1.4
16,097 - +0.2
16,097 - +1.1
16,097 - -0.4
16,097 - -1.4
16,097 - -0.3
16,097 - -1.1
16,097 - -0.5
16,097 - -2.3
16,129 + -0.0
16,129 + +0.3
16,231 - -0.3

Or see this region's nucleotide sequence