Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0008

Experiment: carbon source anaerobic Succinic Acid 31.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_B0007 and Rru_B0008 are separated by 619 nucleotidesRru_B0008 and Rru_B0009 are separated by 27 nucleotides Rru_B0007: Rru_B0007 - Glycosyl transferase, group 1 (NCBI), at 6,225 to 9,935 _B0007 Rru_B0008: Rru_B0008 - putative fragment of transposase protein (NCBI), at 10,555 to 10,806 _B0008 Rru_B0009: Rru_B0009 - Transposase, mutator type (NCBI), at 10,834 to 11,760 _B0009 Position (kb) 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.936 kb on + strandat 9.937 kb on - strandat 9.937 kb on - strandat 9.937 kb on - strandat 9.967 kb on + strandat 9.967 kb on + strandat 9.968 kb on - strandat 10.021 kb on - strandat 10.193 kb on + strandat 10.194 kb on - strandat 10.209 kb on + strandat 10.209 kb on + strandat 10.210 kb on - strandat 10.225 kb on + strandat 10.288 kb on + strandat 10.289 kb on - strandat 10.290 kb on + strandat 10.290 kb on + strandat 10.290 kb on + strandat 10.290 kb on + strandat 10.291 kb on - strandat 10.291 kb on - strandat 10.291 kb on - strandat 10.414 kb on - strandat 10.414 kb on - strandat 10.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction carbon source anaerobic Succinic Acid 31.25 mM
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9,936 + +2.1
9,937 - -1.1
9,937 - -0.9
9,937 - +1.9
9,967 + +0.5
9,967 + -0.1
9,968 - +0.2
10,021 - +0.7
10,193 + +1.1
10,194 - +1.5
10,209 + +2.6
10,209 + -0.4
10,210 - -1.1
10,225 + -2.0
10,288 + +2.1
10,289 - +1.4
10,290 + -3.3
10,290 + -1.3
10,290 + -2.2
10,290 + -1.1
10,291 - -2.4
10,291 - -0.2
10,291 - -1.5
10,414 - -0.1
10,414 - -2.2
10,414 - +0.1

Or see this region's nucleotide sequence