Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6072

Experiment: Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6069 and Pf6N2E2_6070 overlap by 4 nucleotidesPf6N2E2_6070 and Pf6N2E2_6071 overlap by 4 nucleotidesPf6N2E2_6071 and Pf6N2E2_6072 overlap by 4 nucleotidesPf6N2E2_6072 and Pf6N2E2_6073 are separated by 235 nucleotidesPf6N2E2_6073 and Pf6N2E2_6074 are separated by 106 nucleotides Pf6N2E2_6069 - FIG049111: Hypothetical protein in pyoverdin gene cluster, at 6,890,763 to 6,891,338 _6069 Pf6N2E2_6070 - FIG137877: Hypothetical protein in pyoverdin gene cluster, at 6,891,335 to 6,891,661 _6070 Pf6N2E2_6071 - FIG139991: Putative thiamine pyrophosphate-requiring enzyme, at 6,891,658 to 6,892,200 _6071 Pf6N2E2_6072 - FIG137594: Putative iron-regulated membrane protein, at 6,892,197 to 6,893,411 _6072 Pf6N2E2_6073 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 6,893,647 to 6,894,108 _6073 Pf6N2E2_6074 - Redox-sensitive transcriptional activator SoxR, at 6,894,215 to 6,894,667 _6074 Position (kb) 6892 6893 6894Strain fitness (log2 ratio) -2 -1 0 1 2at 6891.280 kb on + strand, within Pf6N2E2_6069at 6891.280 kb on + strand, within Pf6N2E2_6069at 6891.280 kb on + strand, within Pf6N2E2_6069at 6891.280 kb on + strand, within Pf6N2E2_6069at 6891.280 kb on + strand, within Pf6N2E2_6069at 6891.281 kb on - strandat 6891.281 kb on - strandat 6891.402 kb on + strand, within Pf6N2E2_6070at 6891.402 kb on + strand, within Pf6N2E2_6070at 6891.403 kb on - strand, within Pf6N2E2_6070at 6891.403 kb on - strand, within Pf6N2E2_6070at 6891.403 kb on - strand, within Pf6N2E2_6070at 6891.888 kb on - strand, within Pf6N2E2_6071at 6891.888 kb on - strand, within Pf6N2E2_6071at 6891.888 kb on - strand, within Pf6N2E2_6071at 6891.910 kb on - strand, within Pf6N2E2_6071at 6892.085 kb on + strand, within Pf6N2E2_6071at 6892.085 kb on + strand, within Pf6N2E2_6071at 6892.086 kb on - strand, within Pf6N2E2_6071at 6892.498 kb on + strand, within Pf6N2E2_6072at 6892.522 kb on + strand, within Pf6N2E2_6072at 6892.522 kb on + strand, within Pf6N2E2_6072at 6892.522 kb on + strand, within Pf6N2E2_6072at 6892.523 kb on - strand, within Pf6N2E2_6072at 6892.567 kb on + strand, within Pf6N2E2_6072at 6892.817 kb on + strand, within Pf6N2E2_6072at 6892.818 kb on - strand, within Pf6N2E2_6072at 6892.909 kb on + strand, within Pf6N2E2_6072at 6892.909 kb on + strand, within Pf6N2E2_6072at 6892.909 kb on + strand, within Pf6N2E2_6072at 6892.909 kb on + strand, within Pf6N2E2_6072at 6892.910 kb on - strand, within Pf6N2E2_6072at 6892.969 kb on + strand, within Pf6N2E2_6072at 6892.984 kb on + strand, within Pf6N2E2_6072at 6892.984 kb on + strand, within Pf6N2E2_6072at 6892.984 kb on + strand, within Pf6N2E2_6072at 6892.985 kb on - strand, within Pf6N2E2_6072at 6893.080 kb on + strand, within Pf6N2E2_6072at 6893.092 kb on + strand, within Pf6N2E2_6072at 6893.092 kb on + strand, within Pf6N2E2_6072at 6893.092 kb on + strand, within Pf6N2E2_6072at 6893.092 kb on + strand, within Pf6N2E2_6072at 6893.092 kb on + strand, within Pf6N2E2_6072at 6893.224 kb on + strand, within Pf6N2E2_6072at 6893.224 kb on + strand, within Pf6N2E2_6072at 6893.224 kb on + strand, within Pf6N2E2_6072at 6893.224 kb on + strand, within Pf6N2E2_6072at 6893.225 kb on - strand, within Pf6N2E2_6072at 6893.225 kb on - strand, within Pf6N2E2_6072at 6893.369 kb on + strandat 6893.369 kb on + strandat 6893.369 kb on + strandat 6893.369 kb on + strandat 6893.369 kb on + strandat 6893.370 kb on - strandat 6893.370 kb on - strandat 6893.370 kb on - strandat 6893.370 kb on - strandat 6893.444 kb on + strandat 6893.473 kb on + strandat 6893.473 kb on + strandat 6893.474 kb on - strandat 6893.507 kb on + strandat 6893.508 kb on - strandat 6893.516 kb on + strandat 6893.516 kb on + strandat 6893.516 kb on + strandat 6893.516 kb on + strandat 6893.517 kb on - strandat 6893.517 kb on - strandat 6893.517 kb on - strandat 6893.517 kb on - strandat 6893.520 kb on + strandat 6893.855 kb on + strand, within Pf6N2E2_6073at 6893.855 kb on + strand, within Pf6N2E2_6073at 6893.855 kb on + strand, within Pf6N2E2_6073at 6893.855 kb on + strand, within Pf6N2E2_6073at 6893.855 kb on + strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.856 kb on - strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.857 kb on + strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6893.858 kb on - strand, within Pf6N2E2_6073at 6894.023 kb on + strand, within Pf6N2E2_6073at 6894.062 kb on + strandat 6894.063 kb on - strandat 6894.171 kb on + strandat 6894.171 kb on + strandat 6894.172 kb on - strandat 6894.173 kb on + strandat 6894.173 kb on + strandat 6894.173 kb on + strandat 6894.174 kb on - strandat 6894.174 kb on - strandat 6894.174 kb on - strandat 6894.174 kb on - strandat 6894.174 kb on - strandat 6894.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2 mM
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6,891,280 + Pf6N2E2_6069 0.90 +0.3
6,891,280 + Pf6N2E2_6069 0.90 -0.2
6,891,280 + Pf6N2E2_6069 0.90 -0.1
6,891,280 + Pf6N2E2_6069 0.90 -0.4
6,891,280 + Pf6N2E2_6069 0.90 -0.2
6,891,281 - +0.3
6,891,281 - -0.9
6,891,402 + Pf6N2E2_6070 0.20 +0.4
6,891,402 + Pf6N2E2_6070 0.20 +0.6
6,891,403 - Pf6N2E2_6070 0.21 +0.8
6,891,403 - Pf6N2E2_6070 0.21 +1.2
6,891,403 - Pf6N2E2_6070 0.21 -0.2
6,891,888 - Pf6N2E2_6071 0.42 -0.5
6,891,888 - Pf6N2E2_6071 0.42 -0.3
6,891,888 - Pf6N2E2_6071 0.42 -0.2
6,891,910 - Pf6N2E2_6071 0.46 -0.2
6,892,085 + Pf6N2E2_6071 0.79 -1.3
6,892,085 + Pf6N2E2_6071 0.79 -1.9
6,892,086 - Pf6N2E2_6071 0.79 -0.6
6,892,498 + Pf6N2E2_6072 0.25 -0.6
6,892,522 + Pf6N2E2_6072 0.27 -0.5
6,892,522 + Pf6N2E2_6072 0.27 +0.1
6,892,522 + Pf6N2E2_6072 0.27 -1.0
6,892,523 - Pf6N2E2_6072 0.27 -0.1
6,892,567 + Pf6N2E2_6072 0.30 -0.8
6,892,817 + Pf6N2E2_6072 0.51 -0.4
6,892,818 - Pf6N2E2_6072 0.51 -1.9
6,892,909 + Pf6N2E2_6072 0.59 -0.3
6,892,909 + Pf6N2E2_6072 0.59 -0.7
6,892,909 + Pf6N2E2_6072 0.59 -1.3
6,892,909 + Pf6N2E2_6072 0.59 +0.1
6,892,910 - Pf6N2E2_6072 0.59 -0.5
6,892,969 + Pf6N2E2_6072 0.64 -0.8
6,892,984 + Pf6N2E2_6072 0.65 -0.8
6,892,984 + Pf6N2E2_6072 0.65 -0.5
6,892,984 + Pf6N2E2_6072 0.65 -0.5
6,892,985 - Pf6N2E2_6072 0.65 -0.6
6,893,080 + Pf6N2E2_6072 0.73 +0.4
6,893,092 + Pf6N2E2_6072 0.74 -1.0
6,893,092 + Pf6N2E2_6072 0.74 +0.0
6,893,092 + Pf6N2E2_6072 0.74 -1.2
6,893,092 + Pf6N2E2_6072 0.74 -0.7
6,893,092 + Pf6N2E2_6072 0.74 -0.7
6,893,224 + Pf6N2E2_6072 0.85 -1.1
6,893,224 + Pf6N2E2_6072 0.85 -0.2
6,893,224 + Pf6N2E2_6072 0.85 -1.2
6,893,224 + Pf6N2E2_6072 0.85 -0.0
6,893,225 - Pf6N2E2_6072 0.85 -1.2
6,893,225 - Pf6N2E2_6072 0.85 -0.7
6,893,369 + -0.6
6,893,369 + -0.3
6,893,369 + -2.5
6,893,369 + -1.3
6,893,369 + -0.5
6,893,370 - -0.4
6,893,370 - -0.8
6,893,370 - +0.1
6,893,370 - -0.1
6,893,444 + -1.1
6,893,473 + -0.0
6,893,473 + -0.2
6,893,474 - +1.0
6,893,507 + -0.1
6,893,508 - +0.5
6,893,516 + -1.4
6,893,516 + -1.0
6,893,516 + -0.7
6,893,516 + -0.6
6,893,517 - -0.4
6,893,517 - +0.1
6,893,517 - -0.1
6,893,517 - +0.6
6,893,520 + +0.1
6,893,855 + Pf6N2E2_6073 0.45 +0.4
6,893,855 + Pf6N2E2_6073 0.45 -0.6
6,893,855 + Pf6N2E2_6073 0.45 -0.8
6,893,855 + Pf6N2E2_6073 0.45 +0.2
6,893,855 + Pf6N2E2_6073 0.45 -0.1
6,893,856 - Pf6N2E2_6073 0.45 +0.5
6,893,856 - Pf6N2E2_6073 0.45 +0.5
6,893,856 - Pf6N2E2_6073 0.45 +0.8
6,893,856 - Pf6N2E2_6073 0.45 -1.7
6,893,856 - Pf6N2E2_6073 0.45 -0.3
6,893,856 - Pf6N2E2_6073 0.45 +0.5
6,893,856 - Pf6N2E2_6073 0.45 +0.6
6,893,856 - Pf6N2E2_6073 0.45 -0.9
6,893,857 + Pf6N2E2_6073 0.45 +0.8
6,893,857 + Pf6N2E2_6073 0.45 -0.3
6,893,857 + Pf6N2E2_6073 0.45 +0.1
6,893,857 + Pf6N2E2_6073 0.45 +0.8
6,893,857 + Pf6N2E2_6073 0.45 -1.5
6,893,857 + Pf6N2E2_6073 0.45 -0.2
6,893,857 + Pf6N2E2_6073 0.45 +1.0
6,893,857 + Pf6N2E2_6073 0.45 +0.0
6,893,857 + Pf6N2E2_6073 0.45 +0.4
6,893,858 - Pf6N2E2_6073 0.46 +1.3
6,893,858 - Pf6N2E2_6073 0.46 -0.4
6,893,858 - Pf6N2E2_6073 0.46 +0.3
6,893,858 - Pf6N2E2_6073 0.46 +0.7
6,893,858 - Pf6N2E2_6073 0.46 -0.5
6,893,858 - Pf6N2E2_6073 0.46 +1.6
6,893,858 - Pf6N2E2_6073 0.46 +0.8
6,893,858 - Pf6N2E2_6073 0.46 -0.2
6,893,858 - Pf6N2E2_6073 0.46 -0.1
6,893,858 - Pf6N2E2_6073 0.46 +0.6
6,893,858 - Pf6N2E2_6073 0.46 +0.8
6,894,023 + Pf6N2E2_6073 0.81 -0.9
6,894,062 + +0.2
6,894,063 - +0.4
6,894,171 + -0.7
6,894,171 + +0.5
6,894,172 - +0.8
6,894,173 + +1.8
6,894,173 + -0.7
6,894,173 + +0.8
6,894,174 - +0.1
6,894,174 - -0.0
6,894,174 - -0.8
6,894,174 - +0.3
6,894,174 - -0.4
6,894,174 - +0.9

Or see this region's nucleotide sequence