Experiment: Aluminum chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6058 and Pf6N2E2_6059 are separated by 32 nucleotides Pf6N2E2_6059 and Pf6N2E2_6060 are separated by 280 nucleotides Pf6N2E2_6060 and Pf6N2E2_6061 overlap by 4 nucleotides
Pf6N2E2_6058 - FIG139976: hypothetical protein, at 6,877,799 to 6,879,304
_6058
Pf6N2E2_6059 - FIG008443: hypothetical protein, at 6,879,337 to 6,879,873
_6059
Pf6N2E2_6060 - Propionate catabolism operon transcriptional regulator of GntR family [predicted], at 6,880,154 to 6,880,864
_6060
Pf6N2E2_6061 - Methylisocitrate lyase (EC 4.1.3.30) (from data) , at 6,880,861 to 6,881,745
_6061
Position (kb)
6879
6880 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6878.622 kb on + strand, within Pf6N2E2_6058 at 6878.623 kb on - strand, within Pf6N2E2_6058 at 6878.973 kb on + strand, within Pf6N2E2_6058 at 6878.998 kb on - strand, within Pf6N2E2_6058 at 6879.000 kb on + strand, within Pf6N2E2_6058 at 6879.001 kb on - strand, within Pf6N2E2_6058 at 6879.001 kb on - strand, within Pf6N2E2_6058 at 6879.001 kb on - strand, within Pf6N2E2_6058 at 6879.001 kb on - strand, within Pf6N2E2_6058 at 6879.117 kb on + strand, within Pf6N2E2_6058 at 6879.117 kb on + strand, within Pf6N2E2_6058 at 6879.118 kb on - strand, within Pf6N2E2_6058 at 6879.118 kb on - strand, within Pf6N2E2_6058 at 6879.118 kb on - strand, within Pf6N2E2_6058 at 6879.338 kb on + strand at 6879.338 kb on + strand at 6879.339 kb on - strand at 6879.386 kb on + strand at 6879.386 kb on + strand at 6879.390 kb on + strand at 6879.390 kb on + strand at 6879.390 kb on + strand at 6879.391 kb on - strand, within Pf6N2E2_6059 at 6879.391 kb on - strand, within Pf6N2E2_6059 at 6879.391 kb on - strand, within Pf6N2E2_6059 at 6879.391 kb on - strand, within Pf6N2E2_6059 at 6879.654 kb on - strand, within Pf6N2E2_6059 at 6879.779 kb on + strand, within Pf6N2E2_6059 at 6879.794 kb on + strand, within Pf6N2E2_6059 at 6879.795 kb on - strand, within Pf6N2E2_6059 at 6879.842 kb on + strand at 6879.842 kb on + strand at 6879.873 kb on + strand at 6879.873 kb on + strand at 6879.873 kb on + strand at 6879.873 kb on + strand at 6879.873 kb on + strand at 6879.874 kb on - strand at 6879.920 kb on + strand at 6879.920 kb on + strand at 6879.920 kb on + strand at 6879.950 kb on + strand at 6879.951 kb on - strand at 6879.952 kb on + strand at 6879.983 kb on + strand at 6879.984 kb on - strand at 6880.060 kb on + strand at 6880.229 kb on - strand, within Pf6N2E2_6060 at 6880.301 kb on + strand, within Pf6N2E2_6060 at 6880.428 kb on - strand, within Pf6N2E2_6060 at 6880.565 kb on + strand, within Pf6N2E2_6060 at 6880.565 kb on + strand, within Pf6N2E2_6060 at 6880.655 kb on + strand, within Pf6N2E2_6060 at 6880.673 kb on + strand, within Pf6N2E2_6060 at 6880.673 kb on + strand, within Pf6N2E2_6060
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2 mM remove 6,878,622 + Pf6N2E2_6058 0.55 -0.7 6,878,623 - Pf6N2E2_6058 0.55 -1.3 6,878,973 + Pf6N2E2_6058 0.78 -2.4 6,878,998 - Pf6N2E2_6058 0.80 -0.5 6,879,000 + Pf6N2E2_6058 0.80 -0.3 6,879,001 - Pf6N2E2_6058 0.80 +0.7 6,879,001 - Pf6N2E2_6058 0.80 -1.3 6,879,001 - Pf6N2E2_6058 0.80 +0.1 6,879,001 - Pf6N2E2_6058 0.80 -1.5 6,879,117 + Pf6N2E2_6058 0.88 +0.2 6,879,117 + Pf6N2E2_6058 0.88 -1.5 6,879,118 - Pf6N2E2_6058 0.88 -0.2 6,879,118 - Pf6N2E2_6058 0.88 -2.7 6,879,118 - Pf6N2E2_6058 0.88 -1.3 6,879,338 + -0.7 6,879,338 + -0.2 6,879,339 - +0.1 6,879,386 + -1.0 6,879,386 + -2.0 6,879,390 + -0.5 6,879,390 + +0.5 6,879,390 + -2.3 6,879,391 - Pf6N2E2_6059 0.10 -1.4 6,879,391 - Pf6N2E2_6059 0.10 -0.2 6,879,391 - Pf6N2E2_6059 0.10 -2.4 6,879,391 - Pf6N2E2_6059 0.10 +0.1 6,879,654 - Pf6N2E2_6059 0.59 -0.2 6,879,779 + Pf6N2E2_6059 0.82 +0.8 6,879,794 + Pf6N2E2_6059 0.85 -1.4 6,879,795 - Pf6N2E2_6059 0.85 -1.2 6,879,842 + -1.3 6,879,842 + -2.2 6,879,873 + -1.6 6,879,873 + -0.4 6,879,873 + +0.2 6,879,873 + +0.5 6,879,873 + -1.2 6,879,874 - +0.1 6,879,920 + +1.8 6,879,920 + -0.0 6,879,920 + -2.2 6,879,950 + -0.1 6,879,951 - -0.1 6,879,952 + +1.3 6,879,983 + -0.7 6,879,984 - -0.2 6,880,060 + -0.1 6,880,229 - Pf6N2E2_6060 0.11 +0.0 6,880,301 + Pf6N2E2_6060 0.21 +0.1 6,880,428 - Pf6N2E2_6060 0.39 +0.8 6,880,565 + Pf6N2E2_6060 0.58 +1.5 6,880,565 + Pf6N2E2_6060 0.58 +0.4 6,880,655 + Pf6N2E2_6060 0.70 +1.4 6,880,673 + Pf6N2E2_6060 0.73 -0.4 6,880,673 + Pf6N2E2_6060 0.73 +0.3
Or see this region's nucleotide sequence