Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3930

Experiment: Aluminum chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3928 and Pf6N2E2_3929 are separated by 63 nucleotidesPf6N2E2_3929 and Pf6N2E2_3930 are separated by 215 nucleotidesPf6N2E2_3930 and Pf6N2E2_3931 are separated by 112 nucleotidesPf6N2E2_3931 and Pf6N2E2_3932 are separated by 80 nucleotides Pf6N2E2_3928 - Methionine ABC transporter permease protein, at 4,565,467 to 4,566,111 _3928 Pf6N2E2_3929 - SAM-dependent methyltransferases, at 4,566,175 to 4,566,801 _3929 Pf6N2E2_3930 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 4,567,017 to 4,567,595 _3930 Pf6N2E2_3931 - ATPases of the AAA+ class, at 4,567,708 to 4,568,154 _3931 Pf6N2E2_3932 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 4,568,235 to 4,569,464 _3932 Position (kb) 4567 4568Strain fitness (log2 ratio) -2 -1 0 1at 4566.136 kb on + strandat 4566.136 kb on + strandat 4566.138 kb on + strandat 4566.138 kb on + strandat 4566.139 kb on - strandat 4566.230 kb on - strandat 4566.230 kb on - strandat 4566.288 kb on + strand, within Pf6N2E2_3929at 4566.309 kb on + strand, within Pf6N2E2_3929at 4566.309 kb on + strand, within Pf6N2E2_3929at 4566.310 kb on - strand, within Pf6N2E2_3929at 4566.310 kb on - strand, within Pf6N2E2_3929at 4566.310 kb on - strand, within Pf6N2E2_3929at 4566.310 kb on - strand, within Pf6N2E2_3929at 4566.671 kb on - strand, within Pf6N2E2_3929at 4566.733 kb on + strand, within Pf6N2E2_3929at 4566.733 kb on + strand, within Pf6N2E2_3929at 4566.734 kb on - strand, within Pf6N2E2_3929at 4566.734 kb on - strand, within Pf6N2E2_3929at 4566.736 kb on + strand, within Pf6N2E2_3929at 4566.904 kb on + strandat 4566.905 kb on - strandat 4566.905 kb on - strandat 4567.088 kb on + strand, within Pf6N2E2_3930at 4567.088 kb on + strand, within Pf6N2E2_3930at 4567.088 kb on + strand, within Pf6N2E2_3930at 4567.088 kb on + strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.089 kb on - strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.308 kb on + strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.309 kb on - strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.330 kb on + strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.331 kb on - strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.392 kb on + strand, within Pf6N2E2_3930at 4567.393 kb on - strand, within Pf6N2E2_3930at 4567.393 kb on - strand, within Pf6N2E2_3930at 4567.563 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.609 kb on + strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.610 kb on - strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.613 kb on + strandat 4567.614 kb on - strandat 4567.614 kb on - strandat 4567.614 kb on - strandat 4567.615 kb on + strandat 4567.615 kb on + strandat 4567.616 kb on - strandat 4567.616 kb on - strandat 4567.616 kb on - strandat 4567.647 kb on + strandat 4567.740 kb on + strandat 4567.740 kb on + strandat 4567.741 kb on - strandat 4567.777 kb on - strand, within Pf6N2E2_3931at 4567.826 kb on + strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4567.827 kb on - strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.067 kb on + strand, within Pf6N2E2_3931at 4568.068 kb on - strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.100 kb on + strand, within Pf6N2E2_3931at 4568.101 kb on - strand, within Pf6N2E2_3931at 4568.152 kb on + strandat 4568.152 kb on + strandat 4568.152 kb on + strandat 4568.153 kb on - strandat 4568.181 kb on - strandat 4568.199 kb on - strandat 4568.199 kb on - strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.236 kb on + strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.237 kb on - strandat 4568.329 kb on + strandat 4568.329 kb on + strandat 4568.507 kb on + strand, within Pf6N2E2_3932at 4568.507 kb on + strand, within Pf6N2E2_3932at 4568.508 kb on - strand, within Pf6N2E2_3932at 4568.521 kb on + strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932at 4568.522 kb on - strand, within Pf6N2E2_3932

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 2 mM
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4,566,136 + -0.1
4,566,136 + -0.9
4,566,138 + -0.2
4,566,138 + -0.4
4,566,139 - -0.2
4,566,230 - +0.5
4,566,230 - +0.6
4,566,288 + Pf6N2E2_3929 0.18 -0.1
4,566,309 + Pf6N2E2_3929 0.21 -2.6
4,566,309 + Pf6N2E2_3929 0.21 +1.3
4,566,310 - Pf6N2E2_3929 0.22 +0.4
4,566,310 - Pf6N2E2_3929 0.22 +0.4
4,566,310 - Pf6N2E2_3929 0.22 -0.0
4,566,310 - Pf6N2E2_3929 0.22 -0.4
4,566,671 - Pf6N2E2_3929 0.79 +0.1
4,566,733 + Pf6N2E2_3929 0.89 +0.0
4,566,733 + Pf6N2E2_3929 0.89 -0.4
4,566,734 - Pf6N2E2_3929 0.89 +0.2
4,566,734 - Pf6N2E2_3929 0.89 +1.1
4,566,736 + Pf6N2E2_3929 0.89 +0.4
4,566,904 + +0.2
4,566,905 - +0.1
4,566,905 - -0.2
4,567,088 + Pf6N2E2_3930 0.12 +0.8
4,567,088 + Pf6N2E2_3930 0.12 -1.0
4,567,088 + Pf6N2E2_3930 0.12 -0.7
4,567,088 + Pf6N2E2_3930 0.12 -0.7
4,567,089 - Pf6N2E2_3930 0.12 -0.7
4,567,089 - Pf6N2E2_3930 0.12 -0.3
4,567,089 - Pf6N2E2_3930 0.12 -1.8
4,567,089 - Pf6N2E2_3930 0.12 +0.5
4,567,089 - Pf6N2E2_3930 0.12 -0.5
4,567,089 - Pf6N2E2_3930 0.12 -0.4
4,567,308 + Pf6N2E2_3930 0.50 -0.0
4,567,308 + Pf6N2E2_3930 0.50 -1.1
4,567,308 + Pf6N2E2_3930 0.50 -0.6
4,567,308 + Pf6N2E2_3930 0.50 -0.4
4,567,308 + Pf6N2E2_3930 0.50 -0.1
4,567,308 + Pf6N2E2_3930 0.50 -0.8
4,567,308 + Pf6N2E2_3930 0.50 -0.7
4,567,309 - Pf6N2E2_3930 0.50 +0.1
4,567,309 - Pf6N2E2_3930 0.50 +0.3
4,567,309 - Pf6N2E2_3930 0.50 +0.2
4,567,309 - Pf6N2E2_3930 0.50 +0.2
4,567,309 - Pf6N2E2_3930 0.50 +0.9
4,567,309 - Pf6N2E2_3930 0.50 -0.5
4,567,309 - Pf6N2E2_3930 0.50 -0.7
4,567,309 - Pf6N2E2_3930 0.50 -0.7
4,567,309 - Pf6N2E2_3930 0.50 -0.5
4,567,309 - Pf6N2E2_3930 0.50 -0.2
4,567,309 - Pf6N2E2_3930 0.50 +0.2
4,567,309 - Pf6N2E2_3930 0.50 +0.7
4,567,309 - Pf6N2E2_3930 0.50 +0.5
4,567,330 + Pf6N2E2_3930 0.54 +0.1
4,567,330 + Pf6N2E2_3930 0.54 -0.8
4,567,330 + Pf6N2E2_3930 0.54 -1.5
4,567,331 - Pf6N2E2_3930 0.54 +0.7
4,567,331 - Pf6N2E2_3930 0.54 +0.5
4,567,331 - Pf6N2E2_3930 0.54 +0.3
4,567,392 + Pf6N2E2_3930 0.65 -0.3
4,567,392 + Pf6N2E2_3930 0.65 -1.5
4,567,392 + Pf6N2E2_3930 0.65 -0.6
4,567,393 - Pf6N2E2_3930 0.65 -2.6
4,567,393 - Pf6N2E2_3930 0.65 -1.7
4,567,563 + -0.4
4,567,609 + -0.4
4,567,609 + +0.1
4,567,609 + -0.8
4,567,609 + +0.2
4,567,609 + -0.8
4,567,609 + +0.9
4,567,609 + -0.4
4,567,609 + -0.1
4,567,609 + -0.2
4,567,609 + -0.5
4,567,610 - -0.4
4,567,610 - +1.5
4,567,610 - +0.1
4,567,610 - -0.4
4,567,610 - +1.1
4,567,613 + -0.5
4,567,613 + -0.8
4,567,613 + -0.2
4,567,613 + -0.2
4,567,613 + -0.3
4,567,614 - -0.0
4,567,614 - +0.4
4,567,614 - -0.6
4,567,615 + -1.5
4,567,615 + +0.2
4,567,616 - -0.1
4,567,616 - -0.8
4,567,616 - -0.6
4,567,647 + +0.1
4,567,740 + -0.7
4,567,740 + +0.0
4,567,741 - -0.2
4,567,777 - Pf6N2E2_3931 0.15 +0.7
4,567,826 + Pf6N2E2_3931 0.26 +0.1
4,567,827 - Pf6N2E2_3931 0.27 +0.1
4,567,827 - Pf6N2E2_3931 0.27 -0.1
4,567,827 - Pf6N2E2_3931 0.27 -0.4
4,567,827 - Pf6N2E2_3931 0.27 -1.1
4,567,827 - Pf6N2E2_3931 0.27 -0.3
4,567,827 - Pf6N2E2_3931 0.27 +1.1
4,567,827 - Pf6N2E2_3931 0.27 -0.5
4,567,827 - Pf6N2E2_3931 0.27 -1.2
4,568,067 + Pf6N2E2_3931 0.80 +0.2
4,568,067 + Pf6N2E2_3931 0.80 -0.8
4,568,067 + Pf6N2E2_3931 0.80 +1.1
4,568,067 + Pf6N2E2_3931 0.80 +0.0
4,568,067 + Pf6N2E2_3931 0.80 +0.1
4,568,067 + Pf6N2E2_3931 0.80 +0.9
4,568,067 + Pf6N2E2_3931 0.80 +0.0
4,568,067 + Pf6N2E2_3931 0.80 +0.5
4,568,068 - Pf6N2E2_3931 0.81 +0.3
4,568,100 + Pf6N2E2_3931 0.88 -1.2
4,568,100 + Pf6N2E2_3931 0.88 -0.5
4,568,100 + Pf6N2E2_3931 0.88 -1.0
4,568,100 + Pf6N2E2_3931 0.88 +0.3
4,568,101 - Pf6N2E2_3931 0.88 -0.4
4,568,152 + -0.2
4,568,152 + +0.2
4,568,152 + -0.8
4,568,153 - +0.1
4,568,181 - -0.8
4,568,199 - +0.1
4,568,199 - -0.4
4,568,236 + -0.6
4,568,236 + -0.6
4,568,236 + +0.2
4,568,236 + -0.6
4,568,236 + -0.4
4,568,236 + -0.2
4,568,237 - +0.5
4,568,237 - +0.7
4,568,237 - +0.4
4,568,237 - +0.1
4,568,237 - +0.7
4,568,237 - -1.2
4,568,237 - +1.1
4,568,329 + +0.8
4,568,329 + -0.0
4,568,507 + Pf6N2E2_3932 0.22 -0.4
4,568,507 + Pf6N2E2_3932 0.22 +0.2
4,568,508 - Pf6N2E2_3932 0.22 +0.2
4,568,521 + Pf6N2E2_3932 0.23 -0.6
4,568,522 - Pf6N2E2_3932 0.23 -0.1
4,568,522 - Pf6N2E2_3932 0.23 -0.5
4,568,522 - Pf6N2E2_3932 0.23 -0.4

Or see this region's nucleotide sequence