Experiment: Aluminum chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1073 and Pf6N2E2_1074 are separated by 229 nucleotides Pf6N2E2_1074 and Pf6N2E2_1075 are separated by 20 nucleotides
Pf6N2E2_1073 - Glycogen debranching enzyme (EC 3.2.1.-), at 1,251,877 to 1,254,036
_1073
Pf6N2E2_1074 - FIG00953356: hypothetical protein, at 1,254,266 to 1,254,619
_1074
Pf6N2E2_1075 - Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 1,254,640 to 1,257,426
_1075
Position (kb)
1254
1255 Strain fitness (log2 ratio)
-2
-1
0
1 at 1253.270 kb on + strand, within Pf6N2E2_1073 at 1253.271 kb on - strand, within Pf6N2E2_1073 at 1253.306 kb on + strand, within Pf6N2E2_1073 at 1253.306 kb on + strand, within Pf6N2E2_1073 at 1253.307 kb on - strand, within Pf6N2E2_1073 at 1253.315 kb on + strand, within Pf6N2E2_1073 at 1253.315 kb on + strand, within Pf6N2E2_1073 at 1253.316 kb on - strand, within Pf6N2E2_1073 at 1253.316 kb on - strand, within Pf6N2E2_1073 at 1253.316 kb on - strand, within Pf6N2E2_1073 at 1253.316 kb on - strand, within Pf6N2E2_1073 at 1253.446 kb on - strand at 1253.507 kb on + strand, within Pf6N2E2_1073 at 1253.507 kb on + strand, within Pf6N2E2_1073 at 1253.765 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.780 kb on + strand, within Pf6N2E2_1073 at 1253.781 kb on - strand, within Pf6N2E2_1073 at 1253.781 kb on - strand, within Pf6N2E2_1073 at 1253.781 kb on - strand, within Pf6N2E2_1073 at 1253.819 kb on + strand, within Pf6N2E2_1073 at 1253.834 kb on + strand at 1253.834 kb on + strand at 1254.036 kb on + strand at 1254.036 kb on + strand at 1254.036 kb on + strand at 1254.036 kb on + strand at 1254.036 kb on + strand at 1254.037 kb on - strand at 1254.037 kb on - strand at 1254.132 kb on + strand at 1254.133 kb on - strand at 1254.133 kb on - strand at 1254.560 kb on - strand, within Pf6N2E2_1074 at 1254.583 kb on - strand, within Pf6N2E2_1074 at 1254.850 kb on + strand at 1254.850 kb on + strand at 1254.851 kb on - strand at 1254.851 kb on - strand at 1254.851 kb on - strand at 1254.955 kb on + strand, within Pf6N2E2_1075 at 1254.955 kb on + strand, within Pf6N2E2_1075 at 1254.956 kb on - strand, within Pf6N2E2_1075 at 1255.149 kb on - strand, within Pf6N2E2_1075 at 1255.149 kb on - strand, within Pf6N2E2_1075 at 1255.316 kb on + strand, within Pf6N2E2_1075 at 1255.556 kb on + strand, within Pf6N2E2_1075 at 1255.557 kb on - strand, within Pf6N2E2_1075
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 2 mM remove 1,253,270 + Pf6N2E2_1073 0.64 -0.7 1,253,271 - Pf6N2E2_1073 0.65 +0.0 1,253,306 + Pf6N2E2_1073 0.66 -0.3 1,253,306 + Pf6N2E2_1073 0.66 +0.4 1,253,307 - Pf6N2E2_1073 0.66 -0.0 1,253,315 + Pf6N2E2_1073 0.67 +1.7 1,253,315 + Pf6N2E2_1073 0.67 -0.0 1,253,316 - Pf6N2E2_1073 0.67 +0.7 1,253,316 - Pf6N2E2_1073 0.67 -0.2 1,253,316 - Pf6N2E2_1073 0.67 +1.2 1,253,316 - Pf6N2E2_1073 0.67 +0.5 1,253,446 - +0.5 1,253,507 + Pf6N2E2_1073 0.75 +0.4 1,253,507 + Pf6N2E2_1073 0.75 +1.3 1,253,765 + Pf6N2E2_1073 0.87 +0.4 1,253,780 + Pf6N2E2_1073 0.88 +0.2 1,253,780 + Pf6N2E2_1073 0.88 +0.2 1,253,780 + Pf6N2E2_1073 0.88 +0.2 1,253,780 + Pf6N2E2_1073 0.88 -0.2 1,253,780 + Pf6N2E2_1073 0.88 -0.8 1,253,780 + Pf6N2E2_1073 0.88 +0.3 1,253,780 + Pf6N2E2_1073 0.88 +0.5 1,253,780 + Pf6N2E2_1073 0.88 +0.9 1,253,780 + Pf6N2E2_1073 0.88 -0.6 1,253,781 - Pf6N2E2_1073 0.88 +0.6 1,253,781 - Pf6N2E2_1073 0.88 -0.8 1,253,781 - Pf6N2E2_1073 0.88 -0.7 1,253,819 + Pf6N2E2_1073 0.90 -1.7 1,253,834 + +0.1 1,253,834 + -0.2 1,254,036 + -0.3 1,254,036 + +0.5 1,254,036 + +0.0 1,254,036 + +0.1 1,254,036 + +0.4 1,254,037 - +1.0 1,254,037 - -0.5 1,254,132 + +0.2 1,254,133 - -2.1 1,254,133 - +0.2 1,254,560 - Pf6N2E2_1074 0.83 -0.5 1,254,583 - Pf6N2E2_1074 0.90 -1.0 1,254,850 + -1.1 1,254,850 + -0.2 1,254,851 - +0.7 1,254,851 - +0.6 1,254,851 - +0.3 1,254,955 + Pf6N2E2_1075 0.11 +1.0 1,254,955 + Pf6N2E2_1075 0.11 +0.6 1,254,956 - Pf6N2E2_1075 0.11 -0.3 1,255,149 - Pf6N2E2_1075 0.18 +0.0 1,255,149 - Pf6N2E2_1075 0.18 +0.3 1,255,316 + Pf6N2E2_1075 0.24 +0.5 1,255,556 + Pf6N2E2_1075 0.33 +0.2 1,255,557 - Pf6N2E2_1075 0.33 +0.5
Or see this region's nucleotide sequence