Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5898

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5897 and Pf1N1B4_5898 are separated by 173 nucleotidesPf1N1B4_5898 and Pf1N1B4_5899 are separated by 4 nucleotides Pf1N1B4_5897 - FIG00963512: hypothetical protein, at 340,631 to 342,550 _5897 Pf1N1B4_5898 - hypothetical protein, at 342,724 to 343,332 _5898 Pf1N1B4_5899 - FIG00954746: hypothetical protein, at 343,337 to 344,551 _5899 Position (kb) 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 341.748 kb on + strand, within Pf1N1B4_5897at 342.358 kb on - strand, within Pf1N1B4_5897at 342.368 kb on - strandat 342.437 kb on + strandat 342.438 kb on - strandat 342.643 kb on - strandat 342.643 kb on - strandat 342.721 kb on + strandat 342.721 kb on + strandat 342.905 kb on - strand, within Pf1N1B4_5898at 342.919 kb on + strand, within Pf1N1B4_5898at 342.920 kb on - strand, within Pf1N1B4_5898at 342.991 kb on + strandat 343.158 kb on + strand, within Pf1N1B4_5898at 343.158 kb on + strand, within Pf1N1B4_5898at 343.159 kb on - strand, within Pf1N1B4_5898at 343.161 kb on - strand, within Pf1N1B4_5898at 343.430 kb on - strandat 343.887 kb on + strand, within Pf1N1B4_5899at 343.896 kb on - strand, within Pf1N1B4_5899at 344.157 kb on - strand, within Pf1N1B4_5899at 344.180 kb on + strand, within Pf1N1B4_5899

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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341,748 + Pf1N1B4_5897 0.58 +1.0
342,358 - Pf1N1B4_5897 0.90 -0.9
342,368 - -0.2
342,437 + +0.8
342,438 - -0.2
342,643 - -0.2
342,643 - -0.5
342,721 + +0.3
342,721 + -0.2
342,905 - Pf1N1B4_5898 0.30 +0.5
342,919 + Pf1N1B4_5898 0.32 -0.8
342,920 - Pf1N1B4_5898 0.32 -0.2
342,991 + +0.4
343,158 + Pf1N1B4_5898 0.71 +0.1
343,158 + Pf1N1B4_5898 0.71 -1.0
343,159 - Pf1N1B4_5898 0.71 -0.5
343,161 - Pf1N1B4_5898 0.72 -3.0
343,430 - +1.0
343,887 + Pf1N1B4_5899 0.45 +1.8
343,896 - Pf1N1B4_5899 0.46 -0.2
344,157 - Pf1N1B4_5899 0.67 +0.5
344,180 + Pf1N1B4_5899 0.69 +0.1

Or see this region's nucleotide sequence