Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5823

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5822 and Pf1N1B4_5823 overlap by 1 nucleotidesPf1N1B4_5823 and Pf1N1B4_5824 are separated by 5 nucleotides Pf1N1B4_5822 - Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B, at 256,081 to 258,957 _5822 Pf1N1B4_5823 - Na(+) H(+) antiporter subunit C, at 258,957 to 259,301 _5823 Pf1N1B4_5824 - Na(+) H(+) antiporter subunit D, at 259,307 to 260,983 _5824 Position (kb) 258 259 260Strain fitness (log2 ratio) -2 -1 0 1at 258.223 kb on + strand, within Pf1N1B4_5822at 258.619 kb on + strand, within Pf1N1B4_5822at 258.619 kb on + strand, within Pf1N1B4_5822at 258.619 kb on + strand, within Pf1N1B4_5822at 258.620 kb on - strand, within Pf1N1B4_5822at 258.829 kb on + strandat 258.898 kb on - strandat 259.065 kb on + strand, within Pf1N1B4_5823at 259.292 kb on + strandat 259.496 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strandat 259.799 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strand, within Pf1N1B4_5824at 259.799 kb on + strand, within Pf1N1B4_5824at 259.800 kb on - strand, within Pf1N1B4_5824at 259.856 kb on + strand, within Pf1N1B4_5824at 260.078 kb on + strand, within Pf1N1B4_5824

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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258,223 + Pf1N1B4_5822 0.74 -0.5
258,619 + Pf1N1B4_5822 0.88 +0.1
258,619 + Pf1N1B4_5822 0.88 -0.2
258,619 + Pf1N1B4_5822 0.88 +0.1
258,620 - Pf1N1B4_5822 0.88 +0.8
258,829 + +0.8
258,898 - -1.6
259,065 + Pf1N1B4_5823 0.31 +1.0
259,292 + +1.5
259,496 + Pf1N1B4_5824 0.11 +0.8
259,799 + Pf1N1B4_5824 0.29 +1.1
259,799 + Pf1N1B4_5824 0.29 +0.4
259,799 + Pf1N1B4_5824 0.29 +0.8
259,799 + -0.2
259,799 + Pf1N1B4_5824 0.29 -2.6
259,799 + Pf1N1B4_5824 0.29 +0.8
259,799 + Pf1N1B4_5824 0.29 -1.2
259,800 - Pf1N1B4_5824 0.29 +0.3
259,856 + Pf1N1B4_5824 0.33 +0.2
260,078 + Pf1N1B4_5824 0.46 -1.2

Or see this region's nucleotide sequence