Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5644

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_5642 and Pf1N1B4_5643 overlap by 4 nucleotidesPf1N1B4_5643 and Pf1N1B4_5644 are separated by 9 nucleotidesPf1N1B4_5644 and Pf1N1B4_5645 are separated by 52 nucleotidesPf1N1B4_5645 and Pf1N1B4_5646 overlap by 6 nucleotides Pf1N1B4_5642 - ABC-type polar amino acid transport system, ATPase component, at 72,116 to 72,907 _5642 Pf1N1B4_5643 - Amino acid ABC transporter, permease protein, at 72,904 to 73,566 _5643 Pf1N1B4_5644 - amino acid ABC transporter, permease protein, at 73,576 to 74,238 _5644 Pf1N1B4_5645 - Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2), at 74,291 to 75,136 _5645 Pf1N1B4_5646 - hypothetical protein, at 75,131 to 75,280 _5646 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1 2at 72.584 kb on - strand, within Pf1N1B4_5642at 72.956 kb on + strandat 72.956 kb on + strandat 73.332 kb on - strand, within Pf1N1B4_5643at 73.332 kb on - strand, within Pf1N1B4_5643at 73.352 kb on - strand, within Pf1N1B4_5643at 73.562 kb on + strandat 73.563 kb on - strandat 73.563 kb on - strandat 73.646 kb on + strand, within Pf1N1B4_5644at 73.647 kb on - strand, within Pf1N1B4_5644at 73.647 kb on - strand, within Pf1N1B4_5644at 73.713 kb on - strand, within Pf1N1B4_5644at 73.715 kb on + strand, within Pf1N1B4_5644at 73.716 kb on - strand, within Pf1N1B4_5644at 73.716 kb on - strand, within Pf1N1B4_5644at 73.829 kb on + strand, within Pf1N1B4_5644at 73.829 kb on + strand, within Pf1N1B4_5644at 73.829 kb on + strand, within Pf1N1B4_5644at 73.830 kb on - strand, within Pf1N1B4_5644at 73.940 kb on + strand, within Pf1N1B4_5644at 73.991 kb on - strand, within Pf1N1B4_5644at 74.009 kb on + strand, within Pf1N1B4_5644at 74.010 kb on - strand, within Pf1N1B4_5644at 74.060 kb on + strand, within Pf1N1B4_5644at 74.060 kb on + strandat 74.060 kb on + strand, within Pf1N1B4_5644at 74.231 kb on + strandat 74.232 kb on - strandat 74.232 kb on - strandat 74.248 kb on + strandat 74.248 kb on + strandat 74.249 kb on - strandat 74.249 kb on - strandat 74.367 kb on + strandat 74.461 kb on - strand, within Pf1N1B4_5645at 74.461 kb on - strandat 74.523 kb on + strand, within Pf1N1B4_5645at 74.524 kb on - strandat 74.584 kb on - strand, within Pf1N1B4_5645at 74.656 kb on - strand, within Pf1N1B4_5645at 74.721 kb on + strand, within Pf1N1B4_5645at 74.722 kb on - strand, within Pf1N1B4_5645at 74.722 kb on - strand, within Pf1N1B4_5645at 74.999 kb on - strand, within Pf1N1B4_5645at 75.188 kb on - strand, within Pf1N1B4_5646

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
72,584 - Pf1N1B4_5642 0.59 +0.2
72,956 + -2.6
72,956 + +0.3
73,332 - Pf1N1B4_5643 0.65 -0.3
73,332 - Pf1N1B4_5643 0.65 -1.6
73,352 - Pf1N1B4_5643 0.68 -1.9
73,562 + +1.1
73,563 - -1.4
73,563 - -0.9
73,646 + Pf1N1B4_5644 0.11 -1.9
73,647 - Pf1N1B4_5644 0.11 -1.9
73,647 - Pf1N1B4_5644 0.11 -1.3
73,713 - Pf1N1B4_5644 0.21 -0.1
73,715 + Pf1N1B4_5644 0.21 -0.0
73,716 - Pf1N1B4_5644 0.21 +0.7
73,716 - Pf1N1B4_5644 0.21 +1.7
73,829 + Pf1N1B4_5644 0.38 +0.5
73,829 + Pf1N1B4_5644 0.38 -0.9
73,829 + Pf1N1B4_5644 0.38 -0.7
73,830 - Pf1N1B4_5644 0.38 -1.3
73,940 + Pf1N1B4_5644 0.55 -1.6
73,991 - Pf1N1B4_5644 0.63 -0.3
74,009 + Pf1N1B4_5644 0.65 -2.6
74,010 - Pf1N1B4_5644 0.65 +1.3
74,060 + Pf1N1B4_5644 0.73 -1.0
74,060 + -0.9
74,060 + Pf1N1B4_5644 0.73 -0.5
74,231 + +0.7
74,232 - +1.0
74,232 - -2.3
74,248 + -0.7
74,248 + +1.9
74,249 - +0.5
74,249 - +0.3
74,367 + -0.3
74,461 - Pf1N1B4_5645 0.20 -0.5
74,461 - +1.7
74,523 + Pf1N1B4_5645 0.27 +0.9
74,524 - +0.3
74,584 - Pf1N1B4_5645 0.35 +0.7
74,656 - Pf1N1B4_5645 0.43 -0.3
74,721 + Pf1N1B4_5645 0.51 +0.1
74,722 - Pf1N1B4_5645 0.51 -0.1
74,722 - Pf1N1B4_5645 0.51 +0.7
74,999 - Pf1N1B4_5645 0.84 +2.3
75,188 - Pf1N1B4_5646 0.38 -1.9

Or see this region's nucleotide sequence