Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_560 and Pf1N1B4_561 are separated by 99 nucleotides Pf1N1B4_561 and Pf1N1B4_562 are separated by 143 nucleotides
Pf1N1B4_560 - Transcriptional regulators, LysR family, at 657,019 to 657,951
_560
Pf1N1B4_561 - Glutathione S-transferase (EC 2.5.1.18), at 658,051 to 658,653
_561
Pf1N1B4_562 - Histidine transporter, periplasmic histidine-binding protein, at 658,797 to 659,810
_562
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.123 kb on + strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.124 kb on - strand, within Pf1N1B4_560 at 657.187 kb on + strand, within Pf1N1B4_560 at 657.187 kb on + strand, within Pf1N1B4_560 at 657.188 kb on - strand, within Pf1N1B4_560 at 657.957 kb on + strand at 657.958 kb on - strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.013 kb on + strand at 658.014 kb on - strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.060 kb on + strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.061 kb on - strand at 658.264 kb on + strand, within Pf1N1B4_561 at 658.265 kb on - strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand at 658.483 kb on + strand at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.483 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.519 kb on + strand, within Pf1N1B4_561 at 658.520 kb on - strand, within Pf1N1B4_561 at 658.527 kb on + strand, within Pf1N1B4_561 at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.711 kb on + strand at 658.712 kb on - strand at 658.712 kb on - strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.713 kb on + strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.714 kb on - strand at 658.776 kb on + strand at 658.777 kb on - strand at 658.777 kb on - strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.786 kb on + strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.787 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 658.799 kb on - strand at 659.165 kb on - strand, within Pf1N1B4_562 at 659.165 kb on - strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.248 kb on + strand, within Pf1N1B4_562 at 659.249 kb on - strand, within Pf1N1B4_562 at 659.249 kb on - strand, within Pf1N1B4_562 at 659.266 kb on + strand at 659.267 kb on - strand, within Pf1N1B4_562 at 659.267 kb on - strand, within Pf1N1B4_562 at 659.418 kb on - strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.449 kb on + strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562 at 659.450 kb on - strand, within Pf1N1B4_562
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 657,123 + Pf1N1B4_560 0.11 +1.2 657,124 - Pf1N1B4_560 0.11 +0.7 657,124 - Pf1N1B4_560 0.11 +1.7 657,124 - Pf1N1B4_560 0.11 -0.7 657,124 - Pf1N1B4_560 0.11 -0.6 657,124 - Pf1N1B4_560 0.11 +0.8 657,124 - Pf1N1B4_560 0.11 +1.8 657,187 + Pf1N1B4_560 0.18 +0.4 657,187 + Pf1N1B4_560 0.18 +0.2 657,188 - Pf1N1B4_560 0.18 -0.0 657,957 + -0.3 657,958 - -0.5 658,013 + -1.0 658,013 + +0.2 658,013 + +1.2 658,014 - -3.0 658,060 + +1.3 658,060 + +1.3 658,060 + +2.8 658,060 + -0.4 658,060 + +1.5 658,060 + +2.0 658,060 + +1.2 658,061 - -0.5 658,061 - -0.4 658,061 - +1.0 658,061 - +0.2 658,061 - -0.0 658,264 + Pf1N1B4_561 0.35 +2.0 658,265 - Pf1N1B4_561 0.35 +0.3 658,483 + Pf1N1B4_561 0.72 +1.0 658,483 + -0.0 658,483 + -1.6 658,483 + Pf1N1B4_561 0.72 -1.0 658,483 + Pf1N1B4_561 0.72 -0.3 658,483 + Pf1N1B4_561 0.72 +1.8 658,519 + Pf1N1B4_561 0.78 -0.7 658,519 + Pf1N1B4_561 0.78 +1.3 658,520 - Pf1N1B4_561 0.78 +1.9 658,527 + Pf1N1B4_561 0.79 +1.3 658,711 + -0.4 658,711 + -0.0 658,711 + -0.6 658,711 + -0.0 658,711 + -0.0 658,711 + +1.3 658,711 + +0.9 658,711 + +0.5 658,711 + -1.0 658,711 + -0.7 658,711 + -0.7 658,712 - -0.0 658,712 - +1.0 658,713 + +0.3 658,713 + -2.3 658,713 + -1.6 658,713 + -0.7 658,713 + -0.0 658,714 - -1.2 658,714 - -0.0 658,714 - -0.4 658,776 + -1.6 658,777 - +1.3 658,777 - -1.0 658,786 + +0.5 658,786 + +0.4 658,786 + +0.1 658,787 - -0.0 658,787 - -0.3 658,787 - -0.3 658,787 - -0.0 658,787 - +0.7 658,799 - +0.8 658,799 - +0.5 658,799 - -0.0 658,799 - +0.7 659,165 - Pf1N1B4_562 0.36 +0.2 659,165 - Pf1N1B4_562 0.36 +0.1 659,248 + Pf1N1B4_562 0.44 -1.0 659,248 + Pf1N1B4_562 0.44 -0.3 659,248 + Pf1N1B4_562 0.44 -1.8 659,249 - Pf1N1B4_562 0.45 -0.6 659,249 - Pf1N1B4_562 0.45 -0.2 659,266 + -0.0 659,267 - Pf1N1B4_562 0.46 -0.3 659,267 - Pf1N1B4_562 0.46 -1.6 659,418 - Pf1N1B4_562 0.61 -2.0 659,449 + Pf1N1B4_562 0.64 +0.5 659,449 + Pf1N1B4_562 0.64 -1.0 659,449 + Pf1N1B4_562 0.64 +0.2 659,450 - Pf1N1B4_562 0.64 +0.5 659,450 - Pf1N1B4_562 0.64 +0.6 659,450 - Pf1N1B4_562 0.64 +0.6 659,450 - Pf1N1B4_562 0.64 -0.0
Or see this region's nucleotide sequence