Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5425 and Pf1N1B4_5426 are separated by 461 nucleotides Pf1N1B4_5426 and Pf1N1B4_5427 are separated by 130 nucleotides
Pf1N1B4_5425 - DNA-binding protein HU-beta, at 165,496 to 165,771
_5425
Pf1N1B4_5426 - hypothetical protein, at 166,233 to 166,580
_5426
Pf1N1B4_5427 - C4-type zinc finger protein, DksA/TraR family, at 166,711 to 167,184
_5427
Position (kb)
166
167 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.244 kb on + strand at 165.269 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.276 kb on + strand at 165.279 kb on + strand at 165.279 kb on + strand at 165.280 kb on - strand at 165.337 kb on + strand at 165.419 kb on + strand at 165.419 kb on + strand at 165.535 kb on - strand, within Pf1N1B4_5425 at 165.640 kb on + strand, within Pf1N1B4_5425 at 165.641 kb on - strand, within Pf1N1B4_5425 at 165.641 kb on - strand, within Pf1N1B4_5425 at 165.724 kb on + strand, within Pf1N1B4_5425 at 165.725 kb on - strand, within Pf1N1B4_5425 at 165.828 kb on - strand at 165.848 kb on + strand at 165.849 kb on - strand at 165.903 kb on - strand at 165.949 kb on + strand at 165.950 kb on - strand at 165.950 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.031 kb on - strand at 166.128 kb on - strand at 166.211 kb on - strand at 166.222 kb on + strand at 166.222 kb on + strand at 166.223 kb on - strand at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.274 kb on + strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.275 kb on - strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.287 kb on + strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.288 kb on - strand, within Pf1N1B4_5426 at 166.347 kb on - strand, within Pf1N1B4_5426 at 166.371 kb on + strand, within Pf1N1B4_5426 at 166.372 kb on - strand, within Pf1N1B4_5426 at 166.439 kb on - strand, within Pf1N1B4_5426 at 166.532 kb on - strand, within Pf1N1B4_5426 at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.603 kb on + strand at 166.604 kb on - strand at 166.604 kb on - strand at 166.604 kb on - strand at 166.819 kb on + strand, within Pf1N1B4_5427 at 166.819 kb on + strand, within Pf1N1B4_5427 at 166.820 kb on - strand, within Pf1N1B4_5427 at 166.820 kb on - strand, within Pf1N1B4_5427 at 166.893 kb on - strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.976 kb on + strand, within Pf1N1B4_5427 at 166.977 kb on - strand at 166.986 kb on + strand, within Pf1N1B4_5427 at 166.986 kb on + strand, within Pf1N1B4_5427 at 166.987 kb on - strand, within Pf1N1B4_5427 at 166.987 kb on - strand, within Pf1N1B4_5427 at 167.056 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.125 kb on + strand, within Pf1N1B4_5427 at 167.126 kb on - strand, within Pf1N1B4_5427 at 167.128 kb on - strand, within Pf1N1B4_5427 at 167.182 kb on + strand at 167.182 kb on + strand at 167.183 kb on - strand at 167.239 kb on - strand at 167.275 kb on - strand at 167.355 kb on - strand at 167.381 kb on - strand at 167.381 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.384 kb on - strand at 167.438 kb on - strand at 167.476 kb on - strand at 167.566 kb on - strand at 167.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 165,244 + -0.4 165,244 + +1.0 165,244 + -0.8 165,244 + +1.0 165,244 + -0.0 165,269 + -1.0 165,276 + -0.6 165,276 + +0.8 165,276 + -1.6 165,276 + -0.0 165,279 + -0.6 165,279 + +2.8 165,280 - -2.0 165,337 + -0.0 165,419 + -2.4 165,419 + -0.0 165,535 - Pf1N1B4_5425 0.14 +0.6 165,640 + Pf1N1B4_5425 0.52 +0.8 165,641 - Pf1N1B4_5425 0.53 -1.0 165,641 - Pf1N1B4_5425 0.53 -0.4 165,724 + Pf1N1B4_5425 0.83 -0.0 165,725 - Pf1N1B4_5425 0.83 +2.0 165,828 - +0.4 165,848 + +1.0 165,849 - -2.0 165,903 - -0.3 165,949 + +0.4 165,950 - +1.3 165,950 - +0.5 166,031 - -1.0 166,031 - -0.0 166,031 - -1.4 166,128 - -0.4 166,211 - -0.4 166,222 + -0.4 166,222 + -0.0 166,223 - -0.0 166,274 + Pf1N1B4_5426 0.12 +1.0 166,274 + Pf1N1B4_5426 0.12 +0.1 166,274 + Pf1N1B4_5426 0.12 -0.6 166,275 - Pf1N1B4_5426 0.12 -0.0 166,275 - Pf1N1B4_5426 0.12 -0.0 166,287 + Pf1N1B4_5426 0.16 +0.6 166,287 + Pf1N1B4_5426 0.16 -1.9 166,287 + Pf1N1B4_5426 0.16 -1.2 166,287 + Pf1N1B4_5426 0.16 -1.0 166,287 + Pf1N1B4_5426 0.16 +0.1 166,288 - Pf1N1B4_5426 0.16 -2.0 166,288 - Pf1N1B4_5426 0.16 +1.0 166,288 - Pf1N1B4_5426 0.16 +1.3 166,347 - Pf1N1B4_5426 0.33 +0.0 166,371 + Pf1N1B4_5426 0.40 -1.4 166,372 - Pf1N1B4_5426 0.40 -2.0 166,439 - Pf1N1B4_5426 0.59 -0.8 166,532 - Pf1N1B4_5426 0.86 -1.0 166,603 + -0.0 166,603 + +1.0 166,603 + -0.0 166,603 + +0.7 166,603 + +1.6 166,604 - -0.6 166,604 - +0.4 166,604 - -0.0 166,819 + Pf1N1B4_5427 0.23 +0.6 166,819 + Pf1N1B4_5427 0.23 -1.6 166,820 - Pf1N1B4_5427 0.23 +3.0 166,820 - Pf1N1B4_5427 0.23 +0.4 166,893 - Pf1N1B4_5427 0.38 +0.4 166,976 + Pf1N1B4_5427 0.56 -0.0 166,976 + Pf1N1B4_5427 0.56 +1.2 166,976 + Pf1N1B4_5427 0.56 -0.4 166,976 + Pf1N1B4_5427 0.56 -0.0 166,976 + Pf1N1B4_5427 0.56 -0.8 166,976 + Pf1N1B4_5427 0.56 +1.0 166,976 + Pf1N1B4_5427 0.56 +1.0 166,976 + Pf1N1B4_5427 0.56 -0.4 166,976 + Pf1N1B4_5427 0.56 +0.6 166,977 - +1.2 166,986 + Pf1N1B4_5427 0.58 -1.0 166,986 + Pf1N1B4_5427 0.58 -1.8 166,987 - Pf1N1B4_5427 0.58 +2.3 166,987 - Pf1N1B4_5427 0.58 -0.6 167,056 + Pf1N1B4_5427 0.73 -0.0 167,125 + Pf1N1B4_5427 0.87 -0.4 167,125 + Pf1N1B4_5427 0.87 -0.0 167,125 + Pf1N1B4_5427 0.87 +0.3 167,125 + Pf1N1B4_5427 0.87 +1.6 167,125 + Pf1N1B4_5427 0.87 +1.6 167,125 + Pf1N1B4_5427 0.87 -2.0 167,125 + Pf1N1B4_5427 0.87 -1.8 167,126 - Pf1N1B4_5427 0.88 -0.0 167,128 - Pf1N1B4_5427 0.88 +1.3 167,182 + +1.3 167,182 + +2.0 167,183 - +0.5 167,239 - -0.0 167,275 - -0.6 167,355 - -1.0 167,381 - +0.6 167,381 - -1.0 167,384 - +2.0 167,384 - +1.7 167,384 - -0.8 167,384 - +0.6 167,384 - -0.0 167,384 - -0.4 167,438 - -0.6 167,476 - +1.0 167,566 - -0.4 167,566 - +0.2
Or see this region's nucleotide sequence