Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5204

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2883 and Pf1N1B4_5204 are separated by 564 nucleotidesPf1N1B4_5204 and Pf1N1B4_5205 are separated by 81 nucleotidesPf1N1B4_5205 and Pf1N1B4_5206 are separated by 33 nucleotidesPf1N1B4_5206 and Pf1N1B4_5207 are separated by 252 nucleotides Pf1N1B4_2883 - FIG001196: Membrane protein YedZ, at 3,229,829 to 3,230,449 _2883 Pf1N1B4_5204 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 3,231,014 to 3,232,542 _5204 Pf1N1B4_5205 - tRNA-Ile-GAT, at 3,232,624 to 3,232,697 _5205 Pf1N1B4_5206 - tRNA-Ala-TGC, at 3,232,731 to 3,232,803 _5206 Pf1N1B4_5207 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 3,233,056 to 3,235,948 _5207 Position (kb) 3231 3232 3233Strain fitness (log2 ratio) -2 -1 0 1 2at 3230.072 kb on + strand, within Pf1N1B4_2883at 3230.072 kb on + strand, within Pf1N1B4_2883at 3230.072 kb on + strand, within Pf1N1B4_2883at 3230.073 kb on - strand, within Pf1N1B4_2883at 3230.164 kb on + strand, within Pf1N1B4_2883at 3230.164 kb on + strand, within Pf1N1B4_2883at 3230.164 kb on + strand, within Pf1N1B4_2883at 3230.164 kb on + strand, within Pf1N1B4_2883at 3230.165 kb on - strand, within Pf1N1B4_2883at 3230.273 kb on + strand, within Pf1N1B4_2883at 3230.273 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.302 kb on + strand, within Pf1N1B4_2883at 3230.303 kb on - strand, within Pf1N1B4_2883at 3230.303 kb on - strand, within Pf1N1B4_2883at 3230.303 kb on - strand, within Pf1N1B4_2883at 3230.303 kb on - strand, within Pf1N1B4_2883at 3230.303 kb on - strand, within Pf1N1B4_2883at 3230.341 kb on + strand, within Pf1N1B4_2883at 3230.341 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strandat 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strandat 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.345 kb on + strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.346 kb on - strand, within Pf1N1B4_2883at 3230.353 kb on + strand, within Pf1N1B4_2883at 3230.353 kb on + strandat 3230.354 kb on - strand, within Pf1N1B4_2883at 3230.354 kb on - strandat 3230.354 kb on - strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.355 kb on + strand, within Pf1N1B4_2883at 3230.391 kb on + strandat 3230.412 kb on + strandat 3230.419 kb on + strandat 3230.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,230,072 + Pf1N1B4_2883 0.39 +1.6
3,230,072 + Pf1N1B4_2883 0.39 -1.6
3,230,072 + Pf1N1B4_2883 0.39 +0.8
3,230,073 - Pf1N1B4_2883 0.39 -0.1
3,230,164 + Pf1N1B4_2883 0.54 +0.6
3,230,164 + Pf1N1B4_2883 0.54 +2.6
3,230,164 + Pf1N1B4_2883 0.54 +0.0
3,230,164 + Pf1N1B4_2883 0.54 +0.4
3,230,165 - Pf1N1B4_2883 0.54 -0.3
3,230,273 + Pf1N1B4_2883 0.71 +0.0
3,230,273 + Pf1N1B4_2883 0.71 +0.3
3,230,302 + Pf1N1B4_2883 0.76 +1.0
3,230,302 + Pf1N1B4_2883 0.76 +0.0
3,230,302 + Pf1N1B4_2883 0.76 -1.0
3,230,302 + Pf1N1B4_2883 0.76 -2.0
3,230,302 + Pf1N1B4_2883 0.76 +1.0
3,230,302 + Pf1N1B4_2883 0.76 -2.3
3,230,302 + Pf1N1B4_2883 0.76 -0.4
3,230,302 + Pf1N1B4_2883 0.76 -2.0
3,230,302 + Pf1N1B4_2883 0.76 +0.8
3,230,302 + Pf1N1B4_2883 0.76 +0.3
3,230,302 + Pf1N1B4_2883 0.76 -0.4
3,230,302 + Pf1N1B4_2883 0.76 +0.6
3,230,302 + Pf1N1B4_2883 0.76 -1.3
3,230,303 - Pf1N1B4_2883 0.76 -0.6
3,230,303 - Pf1N1B4_2883 0.76 -0.8
3,230,303 - Pf1N1B4_2883 0.76 +0.0
3,230,303 - Pf1N1B4_2883 0.76 +0.0
3,230,303 - Pf1N1B4_2883 0.76 +0.4
3,230,341 + Pf1N1B4_2883 0.82 +1.0
3,230,341 + Pf1N1B4_2883 0.82 -0.4
3,230,345 + Pf1N1B4_2883 0.83 +0.0
3,230,345 + Pf1N1B4_2883 0.83 -2.6
3,230,345 + Pf1N1B4_2883 0.83 -0.3
3,230,345 + Pf1N1B4_2883 0.83 +0.0
3,230,345 + Pf1N1B4_2883 0.83 -1.3
3,230,345 + Pf1N1B4_2883 0.83 -1.6
3,230,345 + Pf1N1B4_2883 0.83 -2.0
3,230,345 + +2.0
3,230,345 + Pf1N1B4_2883 0.83 +1.6
3,230,345 + Pf1N1B4_2883 0.83 +0.2
3,230,345 + Pf1N1B4_2883 0.83 +0.0
3,230,345 + Pf1N1B4_2883 0.83 +0.0
3,230,345 + Pf1N1B4_2883 0.83 -0.6
3,230,345 + Pf1N1B4_2883 0.83 +0.0
3,230,345 + Pf1N1B4_2883 0.83 +1.0
3,230,345 + Pf1N1B4_2883 0.83 +1.3
3,230,345 + +0.0
3,230,345 + Pf1N1B4_2883 0.83 -0.5
3,230,345 + Pf1N1B4_2883 0.83 +1.0
3,230,346 - Pf1N1B4_2883 0.83 +0.4
3,230,346 - Pf1N1B4_2883 0.83 +0.0
3,230,346 - Pf1N1B4_2883 0.83 -1.0
3,230,346 - Pf1N1B4_2883 0.83 -0.3
3,230,346 - Pf1N1B4_2883 0.83 +1.3
3,230,346 - Pf1N1B4_2883 0.83 +1.8
3,230,346 - Pf1N1B4_2883 0.83 +0.7
3,230,353 + Pf1N1B4_2883 0.84 +0.2
3,230,353 + +1.0
3,230,354 - Pf1N1B4_2883 0.85 -0.4
3,230,354 - +0.0
3,230,354 - Pf1N1B4_2883 0.85 +1.7
3,230,355 + Pf1N1B4_2883 0.85 +1.1
3,230,355 + Pf1N1B4_2883 0.85 +0.0
3,230,355 + Pf1N1B4_2883 0.85 -2.0
3,230,355 + Pf1N1B4_2883 0.85 -0.4
3,230,355 + Pf1N1B4_2883 0.85 -1.5
3,230,355 + Pf1N1B4_2883 0.85 -0.7
3,230,355 + Pf1N1B4_2883 0.85 +1.0
3,230,391 + +0.0
3,230,412 + -1.6
3,230,419 + +0.0
3,230,448 - +0.3

Or see this region's nucleotide sequence