Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4710 and Pf1N1B4_4711 are separated by 68 nucleotides Pf1N1B4_4711 and Pf1N1B4_4712 are separated by 3 nucleotides Pf1N1B4_4712 and Pf1N1B4_4713 are separated by 55 nucleotides
Pf1N1B4_4710 - Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine, at 5,206,906 to 5,207,829
_4710
Pf1N1B4_4711 - hypothetical protein, at 5,207,898 to 5,209,475
_4711
Pf1N1B4_4712 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,209,479 to 5,209,952
_4712
Pf1N1B4_4713 - Xanthine permease, at 5,210,008 to 5,211,483
_4713
Position (kb) 5207
5208
5209
5210 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5207.024 kb on + strand, within Pf1N1B4_4710 at 5207.025 kb on - strand, within Pf1N1B4_4710 at 5207.025 kb on - strand, within Pf1N1B4_4710 at 5207.141 kb on + strand, within Pf1N1B4_4710 at 5207.240 kb on + strand, within Pf1N1B4_4710 at 5207.240 kb on + strand, within Pf1N1B4_4710 at 5207.240 kb on + strand, within Pf1N1B4_4710 at 5207.241 kb on - strand, within Pf1N1B4_4710 at 5207.242 kb on + strand at 5207.257 kb on + strand, within Pf1N1B4_4710 at 5207.437 kb on + strand at 5207.691 kb on - strand, within Pf1N1B4_4710 at 5207.735 kb on - strand at 5207.774 kb on + strand at 5207.775 kb on - strand at 5207.775 kb on - strand at 5207.775 kb on - strand at 5207.827 kb on + strand at 5207.946 kb on - strand at 5207.946 kb on - strand at 5207.952 kb on + strand at 5207.953 kb on - strand at 5207.953 kb on - strand at 5207.953 kb on - strand at 5207.953 kb on - strand at 5208.132 kb on + strand, within Pf1N1B4_4711 at 5208.132 kb on + strand, within Pf1N1B4_4711 at 5208.132 kb on + strand, within Pf1N1B4_4711 at 5208.133 kb on - strand, within Pf1N1B4_4711 at 5208.204 kb on + strand, within Pf1N1B4_4711 at 5208.204 kb on + strand, within Pf1N1B4_4711 at 5208.205 kb on - strand, within Pf1N1B4_4711 at 5208.205 kb on - strand, within Pf1N1B4_4711 at 5208.205 kb on - strand at 5208.307 kb on - strand, within Pf1N1B4_4711 at 5208.570 kb on + strand, within Pf1N1B4_4711 at 5208.580 kb on + strand, within Pf1N1B4_4711 at 5208.893 kb on + strand, within Pf1N1B4_4711 at 5208.894 kb on - strand, within Pf1N1B4_4711 at 5209.186 kb on - strand at 5209.281 kb on + strand, within Pf1N1B4_4711 at 5209.411 kb on + strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.412 kb on - strand at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.579 kb on + strand, within Pf1N1B4_4712 at 5209.580 kb on - strand, within Pf1N1B4_4712 at 5209.765 kb on + strand at 5210.021 kb on - strand at 5210.154 kb on + strand at 5210.155 kb on - strand at 5210.155 kb on - strand at 5210.236 kb on + strand, within Pf1N1B4_4713
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,207,024 + Pf1N1B4_4710 0.13 +1.0 5,207,025 - Pf1N1B4_4710 0.13 -1.0 5,207,025 - Pf1N1B4_4710 0.13 +0.5 5,207,141 + Pf1N1B4_4710 0.25 -0.9 5,207,240 + Pf1N1B4_4710 0.36 +0.4 5,207,240 + Pf1N1B4_4710 0.36 -0.2 5,207,240 + Pf1N1B4_4710 0.36 +2.5 5,207,241 - Pf1N1B4_4710 0.36 +1.6 5,207,242 + -0.3 5,207,257 + Pf1N1B4_4710 0.38 +0.9 5,207,437 + +1.7 5,207,691 - Pf1N1B4_4710 0.85 +0.3 5,207,735 - -1.3 5,207,774 + +0.9 5,207,775 - -0.3 5,207,775 - -0.6 5,207,775 - +1.7 5,207,827 + -0.3 5,207,946 - +0.7 5,207,946 - +0.9 5,207,952 + -0.9 5,207,953 - +1.5 5,207,953 - -0.8 5,207,953 - +2.1 5,207,953 - -0.0 5,208,132 + Pf1N1B4_4711 0.15 +1.3 5,208,132 + Pf1N1B4_4711 0.15 +1.0 5,208,132 + Pf1N1B4_4711 0.15 +0.7 5,208,133 - Pf1N1B4_4711 0.15 -0.3 5,208,204 + Pf1N1B4_4711 0.19 -0.3 5,208,204 + Pf1N1B4_4711 0.19 +2.7 5,208,205 - Pf1N1B4_4711 0.19 -1.3 5,208,205 - Pf1N1B4_4711 0.19 -1.3 5,208,205 - +0.7 5,208,307 - Pf1N1B4_4711 0.26 +2.0 5,208,570 + Pf1N1B4_4711 0.43 -0.3 5,208,580 + Pf1N1B4_4711 0.43 +0.8 5,208,893 + Pf1N1B4_4711 0.63 +0.9 5,208,894 - Pf1N1B4_4711 0.63 +1.0 5,209,186 - +0.3 5,209,281 + Pf1N1B4_4711 0.88 +0.2 5,209,411 + +1.5 5,209,412 - -1.3 5,209,412 - -1.3 5,209,412 - +0.7 5,209,412 - -1.9 5,209,412 - +2.5 5,209,412 - -0.7 5,209,412 - -3.3 5,209,579 + Pf1N1B4_4712 0.21 +1.0 5,209,579 + Pf1N1B4_4712 0.21 +1.0 5,209,579 + Pf1N1B4_4712 0.21 -0.5 5,209,580 - Pf1N1B4_4712 0.21 -2.1 5,209,765 + +0.7 5,210,021 - +0.2 5,210,154 + +0.7 5,210,155 - +1.7 5,210,155 - -0.5 5,210,236 + Pf1N1B4_4713 0.15 -2.3
Or see this region's nucleotide sequence