Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_358

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_356 and Pf1N1B4_357 are separated by 4 nucleotidesPf1N1B4_357 and Pf1N1B4_358 are separated by 186 nucleotidesPf1N1B4_358 and Pf1N1B4_359 are separated by 374 nucleotides Pf1N1B4_356 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 423,359 to 424,057 _356 Pf1N1B4_357 - Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase, at 424,062 to 424,733 _357 Pf1N1B4_358 - Oxidoreductase, short chain dehydrogenase/reductase family, at 424,920 to 425,660 _358 Pf1N1B4_359 - GGDEF domain protein, at 426,035 to 426,961 _359 Position (kb) 424 425 426Strain fitness (log2 ratio) -2 -1 0 1 2 3at 424.630 kb on - strand, within Pf1N1B4_357at 424.793 kb on + strandat 424.793 kb on + strandat 424.793 kb on + strandat 424.794 kb on - strandat 424.794 kb on - strandat 424.794 kb on - strandat 424.794 kb on - strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.797 kb on + strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.798 kb on - strandat 424.838 kb on - strandat 424.883 kb on + strandat 424.883 kb on + strandat 424.883 kb on + strandat 424.883 kb on + strandat 424.883 kb on + strandat 424.919 kb on + strandat 424.919 kb on + strandat 424.920 kb on - strandat 424.920 kb on - strandat 424.920 kb on - strandat 424.930 kb on - strandat 424.930 kb on - strandat 425.017 kb on - strand, within Pf1N1B4_358at 425.017 kb on - strandat 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.079 kb on + strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.080 kb on - strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strand, within Pf1N1B4_358at 425.157 kb on + strandat 425.157 kb on + strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.158 kb on - strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.470 kb on + strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.471 kb on - strand, within Pf1N1B4_358at 425.544 kb on + strand, within Pf1N1B4_358at 425.598 kb on + strandat 425.598 kb on + strandat 425.598 kb on + strandat 425.599 kb on - strandat 425.599 kb on - strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.604 kb on + strandat 425.605 kb on - strandat 425.605 kb on - strandat 425.658 kb on + strandat 425.721 kb on - strandat 425.745 kb on - strandat 425.745 kb on - strandat 425.745 kb on - strandat 425.905 kb on + strandat 425.905 kb on + strandat 425.906 kb on - strandat 425.925 kb on + strandat 425.925 kb on + strandat 426.001 kb on + strandat 426.012 kb on + strandat 426.013 kb on - strandat 426.211 kb on - strand, within Pf1N1B4_359at 426.317 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.620 kb on + strand, within Pf1N1B4_359at 426.621 kb on - strand, within Pf1N1B4_359

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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424,630 - Pf1N1B4_357 0.85 -1.4
424,793 + -0.4
424,793 + +0.3
424,793 + +0.1
424,794 - -1.1
424,794 - -0.7
424,794 - +2.9
424,794 - -0.7
424,797 + +0.9
424,797 + -1.1
424,797 + -0.5
424,797 + -0.7
424,797 + +0.4
424,797 + -1.7
424,797 + +1.9
424,798 - -0.1
424,798 - -1.7
424,798 - -1.1
424,798 - +1.5
424,798 - +0.4
424,798 - -1.7
424,798 - -0.1
424,798 - -0.1
424,798 - -0.1
424,798 - -1.9
424,798 - -0.1
424,798 - +1.3
424,798 - -1.4
424,838 - -2.1
424,883 + +0.2
424,883 + +0.1
424,883 + -1.3
424,883 + -0.4
424,883 + -0.8
424,919 + -0.7
424,919 + -1.1
424,920 - +0.5
424,920 - +2.9
424,920 - +0.2
424,930 - +1.2
424,930 - -1.1
425,017 - Pf1N1B4_358 0.13 -0.5
425,017 - -0.1
425,079 + Pf1N1B4_358 0.21 -0.1
425,079 + Pf1N1B4_358 0.21 -1.4
425,079 + Pf1N1B4_358 0.21 -2.6
425,079 + Pf1N1B4_358 0.21 -1.1
425,080 - Pf1N1B4_358 0.22 -0.7
425,080 - Pf1N1B4_358 0.22 +1.9
425,080 - Pf1N1B4_358 0.22 +0.5
425,080 - Pf1N1B4_358 0.22 -0.3
425,157 + Pf1N1B4_358 0.32 +0.5
425,157 + Pf1N1B4_358 0.32 +0.4
425,157 + Pf1N1B4_358 0.32 -2.3
425,157 + Pf1N1B4_358 0.32 -1.1
425,157 + Pf1N1B4_358 0.32 +0.2
425,157 + +0.9
425,157 + Pf1N1B4_358 0.32 -1.7
425,158 - Pf1N1B4_358 0.32 -0.5
425,158 - Pf1N1B4_358 0.32 +0.9
425,158 - Pf1N1B4_358 0.32 +0.5
425,158 - Pf1N1B4_358 0.32 -0.7
425,158 - Pf1N1B4_358 0.32 +0.5
425,470 + Pf1N1B4_358 0.74 -2.1
425,470 + Pf1N1B4_358 0.74 -0.1
425,470 + Pf1N1B4_358 0.74 -1.1
425,470 + Pf1N1B4_358 0.74 -1.7
425,470 + Pf1N1B4_358 0.74 +0.2
425,470 + Pf1N1B4_358 0.74 +0.1
425,471 - Pf1N1B4_358 0.74 -0.7
425,471 - Pf1N1B4_358 0.74 -1.1
425,471 - Pf1N1B4_358 0.74 -1.1
425,471 - Pf1N1B4_358 0.74 -0.6
425,471 - Pf1N1B4_358 0.74 -1.1
425,471 - Pf1N1B4_358 0.74 +0.9
425,471 - Pf1N1B4_358 0.74 -0.1
425,544 + Pf1N1B4_358 0.84 -1.0
425,598 + -0.1
425,598 + -0.4
425,598 + +0.7
425,599 - +0.9
425,599 - -1.3
425,604 + +0.9
425,604 + +0.6
425,604 + +0.6
425,604 + -0.8
425,604 + +0.5
425,604 + -0.1
425,605 - -0.1
425,605 - +0.9
425,658 + -0.0
425,721 - +1.3
425,745 - -0.9
425,745 - -1.5
425,745 - +0.3
425,905 + -1.7
425,905 + -1.1
425,906 - -0.6
425,925 + -1.4
425,925 + -0.1
426,001 + -0.1
426,012 + -1.1
426,013 - -1.1
426,211 - Pf1N1B4_359 0.19 -0.8
426,317 + Pf1N1B4_359 0.30 -0.1
426,620 + Pf1N1B4_359 0.63 -0.1
426,620 + Pf1N1B4_359 0.63 +0.9
426,620 + Pf1N1B4_359 0.63 +0.3
426,621 - Pf1N1B4_359 0.63 -0.1

Or see this region's nucleotide sequence