Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3033 and Pf1N1B4_3034 overlap by 1 nucleotides Pf1N1B4_3034 and Pf1N1B4_3035 overlap by 4 nucleotides
Pf1N1B4_3033 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 3,413,550 to 3,415,172
_3033
Pf1N1B4_3034 - Chemotaxis signal transduction protein, at 3,415,172 to 3,415,708
_3034
Pf1N1B4_3035 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 3,415,705 to 3,416,994
_3035
Position (kb)
3415
3416 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3414.750 kb on + strand, within Pf1N1B4_3033 at 3414.819 kb on + strand, within Pf1N1B4_3033 at 3414.819 kb on + strand, within Pf1N1B4_3033 at 3414.819 kb on + strand, within Pf1N1B4_3033 at 3414.820 kb on - strand, within Pf1N1B4_3033 at 3414.820 kb on - strand at 3414.820 kb on - strand, within Pf1N1B4_3033 at 3414.820 kb on - strand, within Pf1N1B4_3033 at 3414.820 kb on - strand, within Pf1N1B4_3033 at 3415.606 kb on - strand, within Pf1N1B4_3034 at 3415.606 kb on - strand, within Pf1N1B4_3034 at 3415.659 kb on + strand at 3415.659 kb on + strand at 3415.660 kb on - strand at 3415.660 kb on - strand at 3415.660 kb on - strand at 3415.746 kb on + strand at 3415.747 kb on - strand at 3415.747 kb on - strand at 3415.840 kb on + strand at 3415.841 kb on - strand, within Pf1N1B4_3035 at 3415.841 kb on - strand, within Pf1N1B4_3035 at 3415.841 kb on - strand, within Pf1N1B4_3035 at 3415.984 kb on - strand, within Pf1N1B4_3035 at 3416.023 kb on - strand, within Pf1N1B4_3035 at 3416.038 kb on + strand, within Pf1N1B4_3035 at 3416.039 kb on - strand, within Pf1N1B4_3035 at 3416.146 kb on + strand, within Pf1N1B4_3035 at 3416.147 kb on - strand, within Pf1N1B4_3035 at 3416.147 kb on - strand, within Pf1N1B4_3035 at 3416.147 kb on - strand, within Pf1N1B4_3035 at 3416.219 kb on - strand, within Pf1N1B4_3035 at 3416.219 kb on - strand, within Pf1N1B4_3035 at 3416.219 kb on - strand, within Pf1N1B4_3035 at 3416.219 kb on - strand, within Pf1N1B4_3035 at 3416.305 kb on + strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.306 kb on - strand, within Pf1N1B4_3035 at 3416.338 kb on + strand, within Pf1N1B4_3035 at 3416.338 kb on + strand, within Pf1N1B4_3035 at 3416.338 kb on + strand, within Pf1N1B4_3035 at 3416.339 kb on - strand, within Pf1N1B4_3035 at 3416.339 kb on - strand, within Pf1N1B4_3035
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,414,750 + Pf1N1B4_3033 0.74 -0.8 3,414,819 + Pf1N1B4_3033 0.78 -0.8 3,414,819 + Pf1N1B4_3033 0.78 -1.2 3,414,819 + Pf1N1B4_3033 0.78 +1.3 3,414,820 - Pf1N1B4_3033 0.78 +1.1 3,414,820 - -1.0 3,414,820 - Pf1N1B4_3033 0.78 -0.2 3,414,820 - Pf1N1B4_3033 0.78 -1.6 3,414,820 - Pf1N1B4_3033 0.78 -3.0 3,415,606 - Pf1N1B4_3034 0.81 +1.3 3,415,606 - Pf1N1B4_3034 0.81 -1.0 3,415,659 + -0.3 3,415,659 + +1.0 3,415,660 - +1.2 3,415,660 - +0.2 3,415,660 - +1.0 3,415,746 + +0.0 3,415,747 - -0.3 3,415,747 - +0.0 3,415,840 + +0.6 3,415,841 - Pf1N1B4_3035 0.11 +0.4 3,415,841 - Pf1N1B4_3035 0.11 +0.6 3,415,841 - Pf1N1B4_3035 0.11 +0.0 3,415,984 - Pf1N1B4_3035 0.22 +1.0 3,416,023 - Pf1N1B4_3035 0.25 +0.6 3,416,038 + Pf1N1B4_3035 0.26 +0.8 3,416,039 - Pf1N1B4_3035 0.26 +0.1 3,416,146 + Pf1N1B4_3035 0.34 +0.6 3,416,147 - Pf1N1B4_3035 0.34 -1.6 3,416,147 - Pf1N1B4_3035 0.34 -1.0 3,416,147 - Pf1N1B4_3035 0.34 +1.1 3,416,219 - Pf1N1B4_3035 0.40 +0.4 3,416,219 - Pf1N1B4_3035 0.40 -1.1 3,416,219 - Pf1N1B4_3035 0.40 +0.5 3,416,219 - Pf1N1B4_3035 0.40 -0.6 3,416,305 + Pf1N1B4_3035 0.47 -0.6 3,416,306 - Pf1N1B4_3035 0.47 +0.5 3,416,306 - Pf1N1B4_3035 0.47 +1.0 3,416,306 - Pf1N1B4_3035 0.47 +0.8 3,416,306 - Pf1N1B4_3035 0.47 +0.9 3,416,306 - Pf1N1B4_3035 0.47 +2.0 3,416,306 - Pf1N1B4_3035 0.47 +0.0 3,416,306 - Pf1N1B4_3035 0.47 -0.4 3,416,338 + Pf1N1B4_3035 0.49 -0.6 3,416,338 + Pf1N1B4_3035 0.49 +1.6 3,416,338 + Pf1N1B4_3035 0.49 -0.6 3,416,339 - Pf1N1B4_3035 0.49 +0.0 3,416,339 - Pf1N1B4_3035 0.49 +1.0
Or see this region's nucleotide sequence