Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1456 and Pf1N1B4_1457 are separated by 182 nucleotides Pf1N1B4_1457 and Pf1N1B4_1458 are separated by 276 nucleotides Pf1N1B4_1458 and Pf1N1B4_1459 overlap by 4 nucleotides
Pf1N1B4_1456 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 1,670,010 to 1,670,690
_1456
Pf1N1B4_1457 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 1,670,873 to 1,671,172
_1457
Pf1N1B4_1458 - Probable transcription regulator Mig-14, at 1,671,449 to 1,672,348
_1458
Pf1N1B4_1459 - Lipid A export ATP-binding/permease protein MsbA, at 1,672,345 to 1,674,135
_1459
Position (kb)
1671
1672
1673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.580 kb on + strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.581 kb on - strand, within Pf1N1B4_1456 at 1670.649 kb on + strand at 1670.650 kb on - strand at 1670.650 kb on - strand at 1670.656 kb on + strand at 1670.656 kb on + strand at 1670.656 kb on + strand at 1670.656 kb on + strand at 1670.656 kb on + strand at 1670.657 kb on - strand at 1670.657 kb on - strand at 1670.657 kb on - strand at 1670.657 kb on - strand at 1670.657 kb on - strand at 1670.660 kb on - strand at 1670.660 kb on - strand at 1670.845 kb on - strand at 1670.846 kb on + strand at 1670.846 kb on + strand at 1670.847 kb on - strand at 1670.927 kb on - strand, within Pf1N1B4_1457 at 1670.927 kb on - strand, within Pf1N1B4_1457 at 1670.927 kb on - strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.978 kb on + strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1670.979 kb on - strand, within Pf1N1B4_1457 at 1671.083 kb on + strand, within Pf1N1B4_1457 at 1671.083 kb on + strand, within Pf1N1B4_1457 at 1671.084 kb on - strand, within Pf1N1B4_1457 at 1671.084 kb on - strand, within Pf1N1B4_1457 at 1671.232 kb on - strand at 1671.254 kb on + strand at 1671.255 kb on - strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.346 kb on + strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.347 kb on - strand at 1671.349 kb on + strand at 1671.349 kb on + strand at 1671.349 kb on + strand at 1671.350 kb on - strand at 1671.350 kb on - strand at 1671.350 kb on - strand at 1671.350 kb on - strand at 1671.406 kb on - strand at 1671.584 kb on + strand, within Pf1N1B4_1458 at 1671.636 kb on + strand, within Pf1N1B4_1458 at 1671.636 kb on + strand, within Pf1N1B4_1458 at 1671.636 kb on + strand, within Pf1N1B4_1458 at 1671.636 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.813 kb on + strand, within Pf1N1B4_1458 at 1671.924 kb on + strand, within Pf1N1B4_1458 at 1671.924 kb on + strand, within Pf1N1B4_1458 at 1671.924 kb on + strand, within Pf1N1B4_1458 at 1671.924 kb on + strand, within Pf1N1B4_1458
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,670,580 + Pf1N1B4_1456 0.84 -0.3 1,670,580 + Pf1N1B4_1456 0.84 +0.3 1,670,580 + Pf1N1B4_1456 0.84 -0.4 1,670,580 + Pf1N1B4_1456 0.84 +0.2 1,670,580 + Pf1N1B4_1456 0.84 +0.6 1,670,580 + Pf1N1B4_1456 0.84 +0.5 1,670,580 + Pf1N1B4_1456 0.84 -1.3 1,670,580 + Pf1N1B4_1456 0.84 +0.8 1,670,580 + Pf1N1B4_1456 0.84 -0.2 1,670,580 + Pf1N1B4_1456 0.84 -0.6 1,670,581 - Pf1N1B4_1456 0.84 +0.2 1,670,581 - Pf1N1B4_1456 0.84 +0.5 1,670,581 - Pf1N1B4_1456 0.84 +1.0 1,670,581 - Pf1N1B4_1456 0.84 -0.1 1,670,581 - Pf1N1B4_1456 0.84 +1.2 1,670,581 - Pf1N1B4_1456 0.84 -1.4 1,670,581 - Pf1N1B4_1456 0.84 -1.2 1,670,649 + +0.3 1,670,650 - -1.0 1,670,650 - +0.4 1,670,656 + -1.0 1,670,656 + -1.4 1,670,656 + -1.3 1,670,656 + +0.2 1,670,656 + -1.2 1,670,657 - -0.8 1,670,657 - +0.5 1,670,657 - -0.0 1,670,657 - -0.1 1,670,657 - -1.4 1,670,660 - -1.8 1,670,660 - -1.6 1,670,845 - -0.8 1,670,846 + +0.0 1,670,846 + +0.5 1,670,847 - +0.2 1,670,927 - Pf1N1B4_1457 0.18 +0.2 1,670,927 - Pf1N1B4_1457 0.18 +0.0 1,670,927 - Pf1N1B4_1457 0.18 +0.5 1,670,978 + Pf1N1B4_1457 0.35 -0.3 1,670,978 + Pf1N1B4_1457 0.35 +0.9 1,670,978 + Pf1N1B4_1457 0.35 -1.1 1,670,978 + Pf1N1B4_1457 0.35 +0.2 1,670,978 + Pf1N1B4_1457 0.35 -0.4 1,670,978 + Pf1N1B4_1457 0.35 +0.6 1,670,978 + Pf1N1B4_1457 0.35 -0.1 1,670,978 + Pf1N1B4_1457 0.35 +0.0 1,670,978 + Pf1N1B4_1457 0.35 +1.4 1,670,979 - Pf1N1B4_1457 0.35 +1.1 1,670,979 - Pf1N1B4_1457 0.35 +0.3 1,670,979 - Pf1N1B4_1457 0.35 -0.4 1,670,979 - Pf1N1B4_1457 0.35 -0.3 1,670,979 - Pf1N1B4_1457 0.35 +0.2 1,670,979 - Pf1N1B4_1457 0.35 -0.1 1,670,979 - Pf1N1B4_1457 0.35 -0.7 1,671,083 + Pf1N1B4_1457 0.70 -0.6 1,671,083 + Pf1N1B4_1457 0.70 -0.4 1,671,084 - Pf1N1B4_1457 0.70 -0.5 1,671,084 - Pf1N1B4_1457 0.70 -0.3 1,671,232 - +0.7 1,671,254 + +1.2 1,671,255 - +0.7 1,671,346 + +0.5 1,671,346 + -0.3 1,671,346 + -0.7 1,671,346 + +0.4 1,671,346 + -1.3 1,671,346 + -0.1 1,671,346 + +0.6 1,671,346 + +0.4 1,671,347 - +0.2 1,671,347 - +0.2 1,671,347 - +0.9 1,671,347 - +1.2 1,671,347 - +0.2 1,671,347 - -0.7 1,671,347 - +0.2 1,671,347 - +0.7 1,671,347 - -1.0 1,671,347 - +2.6 1,671,347 - +0.2 1,671,347 - -0.1 1,671,349 + +0.8 1,671,349 + -0.0 1,671,349 + +1.2 1,671,350 - +0.4 1,671,350 - +0.2 1,671,350 - -2.6 1,671,350 - +0.6 1,671,406 - -0.4 1,671,584 + Pf1N1B4_1458 0.15 +1.2 1,671,636 + Pf1N1B4_1458 0.21 +1.2 1,671,636 + Pf1N1B4_1458 0.21 +2.7 1,671,636 + Pf1N1B4_1458 0.21 +0.6 1,671,636 + Pf1N1B4_1458 0.21 +0.2 1,671,813 + Pf1N1B4_1458 0.40 -0.3 1,671,813 + Pf1N1B4_1458 0.40 -2.2 1,671,813 + Pf1N1B4_1458 0.40 -0.4 1,671,813 + Pf1N1B4_1458 0.40 +0.2 1,671,813 + Pf1N1B4_1458 0.40 +1.5 1,671,813 + Pf1N1B4_1458 0.40 -0.1 1,671,813 + Pf1N1B4_1458 0.40 -1.8 1,671,813 + Pf1N1B4_1458 0.40 -1.2 1,671,813 + Pf1N1B4_1458 0.40 -0.8 1,671,813 + Pf1N1B4_1458 0.40 -1.2 1,671,813 + Pf1N1B4_1458 0.40 -2.0 1,671,813 + Pf1N1B4_1458 0.40 -0.8 1,671,813 + Pf1N1B4_1458 0.40 -0.6 1,671,813 + Pf1N1B4_1458 0.40 -0.8 1,671,813 + Pf1N1B4_1458 0.40 +0.4 1,671,813 + Pf1N1B4_1458 0.40 -0.3 1,671,813 + Pf1N1B4_1458 0.40 -0.8 1,671,813 + Pf1N1B4_1458 0.40 -1.4 1,671,813 + Pf1N1B4_1458 0.40 -0.6 1,671,813 + Pf1N1B4_1458 0.40 +0.2 1,671,813 + Pf1N1B4_1458 0.40 -0.6 1,671,813 + Pf1N1B4_1458 0.40 -0.7 1,671,924 + Pf1N1B4_1458 0.53 +0.4 1,671,924 + Pf1N1B4_1458 0.53 -2.2 1,671,924 + Pf1N1B4_1458 0.53 -0.8 1,671,924 + Pf1N1B4_1458 0.53 -0.8
Or see this region's nucleotide sequence