Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04670

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04660 and MMJJ_RS04665 are separated by 15 nucleotidesMMJJ_RS04665 and MMJJ_RS04670 are separated by 27 nucleotidesMMJJ_RS04670 and MMJJ_RS04675 are separated by 18 nucleotides MMJJ_RS04660: MMJJ_RS04660 - hypoxanthine/guanine phosphoribosyltransferase, at 870,231 to 870,788 _RS04660 MMJJ_RS04665: MMJJ_RS04665 - fumarylacetoacetate hydrolase family protein, at 870,804 to 871,412 _RS04665 MMJJ_RS04670: MMJJ_RS04670 - DUF2117 domain-containing protein, at 871,440 to 872,555 _RS04670 MMJJ_RS04675: MMJJ_RS04675 - thiamine pyrophosphate-binding protein, at 872,574 to 874,079 _RS04675 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1at 870.465 kb on - strand, within MMJJ_RS04660at 870.466 kb on + strand, within MMJJ_RS04660at 870.470 kb on - strand, within MMJJ_RS04660at 870.470 kb on - strand, within MMJJ_RS04660at 870.470 kb on - strand, within MMJJ_RS04660at 870.471 kb on + strand, within MMJJ_RS04660at 870.471 kb on + strand, within MMJJ_RS04660at 870.471 kb on + strand, within MMJJ_RS04660at 870.471 kb on + strand, within MMJJ_RS04660at 870.489 kb on - strand, within MMJJ_RS04660at 870.490 kb on + strand, within MMJJ_RS04660at 870.490 kb on + strand, within MMJJ_RS04660at 870.549 kb on - strand, within MMJJ_RS04660at 870.549 kb on - strand, within MMJJ_RS04660at 870.550 kb on + strand, within MMJJ_RS04660at 870.550 kb on + strand, within MMJJ_RS04660at 870.553 kb on - strand, within MMJJ_RS04660at 870.566 kb on - strand, within MMJJ_RS04660at 870.567 kb on + strand, within MMJJ_RS04660at 870.599 kb on - strand, within MMJJ_RS04660at 870.602 kb on + strand, within MMJJ_RS04660at 870.631 kb on - strand, within MMJJ_RS04660at 870.660 kb on + strand, within MMJJ_RS04660at 870.678 kb on + strand, within MMJJ_RS04660at 870.678 kb on + strand, within MMJJ_RS04660at 870.733 kb on - strandat 870.741 kb on + strandat 870.741 kb on + strandat 870.746 kb on + strandat 870.746 kb on + strandat 870.746 kb on + strandat 870.781 kb on - strandat 870.781 kb on - strandat 870.782 kb on + strandat 870.830 kb on + strandat 870.847 kb on + strandat 870.911 kb on - strand, within MMJJ_RS04665at 870.971 kb on + strand, within MMJJ_RS04665at 871.048 kb on - strand, within MMJJ_RS04665at 871.048 kb on - strand, within MMJJ_RS04665at 871.049 kb on + strand, within MMJJ_RS04665at 871.049 kb on + strand, within MMJJ_RS04665at 871.058 kb on - strand, within MMJJ_RS04665at 871.066 kb on - strand, within MMJJ_RS04665at 871.134 kb on + strand, within MMJJ_RS04665at 871.159 kb on - strand, within MMJJ_RS04665at 871.182 kb on + strand, within MMJJ_RS04665at 871.246 kb on - strand, within MMJJ_RS04665at 871.247 kb on + strand, within MMJJ_RS04665at 871.247 kb on + strand, within MMJJ_RS04665at 871.247 kb on + strand, within MMJJ_RS04665at 871.310 kb on - strand, within MMJJ_RS04665at 871.310 kb on - strand, within MMJJ_RS04665at 871.311 kb on + strand, within MMJJ_RS04665at 871.358 kb on - strandat 871.579 kb on - strand, within MMJJ_RS04670at 871.580 kb on + strand, within MMJJ_RS04670at 871.811 kb on - strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.923 kb on + strand, within MMJJ_RS04670at 871.982 kb on - strand, within MMJJ_RS04670at 872.037 kb on + strand, within MMJJ_RS04670at 872.254 kb on - strand, within MMJJ_RS04670at 872.255 kb on + strand, within MMJJ_RS04670at 872.379 kb on + strand, within MMJJ_RS04670at 872.379 kb on + strand, within MMJJ_RS04670at 872.440 kb on - strand, within MMJJ_RS04670at 872.526 kb on - strandat 872.545 kb on - strandat 872.559 kb on - strandat 872.591 kb on - strandat 872.883 kb on - strand, within MMJJ_RS04675at 872.884 kb on + strand, within MMJJ_RS04675at 872.884 kb on + strand, within MMJJ_RS04675at 872.885 kb on - strand, within MMJJ_RS04675at 872.898 kb on - strand, within MMJJ_RS04675at 872.944 kb on + strand, within MMJJ_RS04675at 872.985 kb on - strand, within MMJJ_RS04675at 872.985 kb on - strandat 872.988 kb on + strand, within MMJJ_RS04675at 873.047 kb on - strand, within MMJJ_RS04675at 873.248 kb on - strand, within MMJJ_RS04675at 873.322 kb on - strand, within MMJJ_RS04675at 873.384 kb on - strand, within MMJJ_RS04675at 873.390 kb on + strand, within MMJJ_RS04675at 873.414 kb on + strand, within MMJJ_RS04675at 873.422 kb on + strand, within MMJJ_RS04675at 873.426 kb on + strand, within MMJJ_RS04675at 873.430 kb on - strand, within MMJJ_RS04675at 873.440 kb on - strand, within MMJJ_RS04675at 873.456 kb on + strand, within MMJJ_RS04675at 873.471 kb on + strand, within MMJJ_RS04675at 873.481 kb on - strand, within MMJJ_RS04675at 873.482 kb on + strand, within MMJJ_RS04675

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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870,465 - MMJJ_RS04660 0.42 +0.6
870,466 + MMJJ_RS04660 0.42 +0.2
870,470 - MMJJ_RS04660 0.43 -1.3
870,470 - MMJJ_RS04660 0.43 -2.4
870,470 - MMJJ_RS04660 0.43 +0.5
870,471 + MMJJ_RS04660 0.43 -0.1
870,471 + MMJJ_RS04660 0.43 +0.9
870,471 + MMJJ_RS04660 0.43 +0.8
870,471 + MMJJ_RS04660 0.43 +1.6
870,489 - MMJJ_RS04660 0.46 +0.5
870,490 + MMJJ_RS04660 0.46 -0.2
870,490 + MMJJ_RS04660 0.46 +0.3
870,549 - MMJJ_RS04660 0.57 -0.4
870,549 - MMJJ_RS04660 0.57 -1.4
870,550 + MMJJ_RS04660 0.57 -0.3
870,550 + MMJJ_RS04660 0.57 -0.4
870,553 - MMJJ_RS04660 0.58 -0.2
870,566 - MMJJ_RS04660 0.60 -0.3
870,567 + MMJJ_RS04660 0.60 +0.2
870,599 - MMJJ_RS04660 0.66 -0.6
870,602 + MMJJ_RS04660 0.66 -0.1
870,631 - MMJJ_RS04660 0.72 -0.6
870,660 + MMJJ_RS04660 0.77 -0.0
870,678 + MMJJ_RS04660 0.80 -0.6
870,678 + MMJJ_RS04660 0.80 +0.2
870,733 - +0.4
870,741 + +0.0
870,741 + -0.1
870,746 + +0.5
870,746 + -0.0
870,746 + +0.5
870,781 - -0.1
870,781 - +0.3
870,782 + +0.1
870,830 + +0.1
870,847 + -0.1
870,911 - MMJJ_RS04665 0.18 +0.7
870,971 + MMJJ_RS04665 0.27 -0.1
871,048 - MMJJ_RS04665 0.40 +0.2
871,048 - MMJJ_RS04665 0.40 +0.3
871,049 + MMJJ_RS04665 0.40 -0.6
871,049 + MMJJ_RS04665 0.40 -0.5
871,058 - MMJJ_RS04665 0.42 -0.5
871,066 - MMJJ_RS04665 0.43 +0.1
871,134 + MMJJ_RS04665 0.54 +0.3
871,159 - MMJJ_RS04665 0.58 -0.3
871,182 + MMJJ_RS04665 0.62 -0.0
871,246 - MMJJ_RS04665 0.73 -0.5
871,247 + MMJJ_RS04665 0.73 -0.2
871,247 + MMJJ_RS04665 0.73 +0.9
871,247 + MMJJ_RS04665 0.73 +0.8
871,310 - MMJJ_RS04665 0.83 +0.6
871,310 - MMJJ_RS04665 0.83 +1.1
871,311 + MMJJ_RS04665 0.83 -0.5
871,358 - -0.3
871,579 - MMJJ_RS04670 0.12 -1.9
871,580 + MMJJ_RS04670 0.13 -2.4
871,811 - MMJJ_RS04670 0.33 -2.1
871,923 + MMJJ_RS04670 0.43 -1.7
871,923 + MMJJ_RS04670 0.43 -3.1
871,923 + MMJJ_RS04670 0.43 -1.4
871,982 - MMJJ_RS04670 0.49 +0.1
872,037 + MMJJ_RS04670 0.53 -1.2
872,254 - MMJJ_RS04670 0.73 -2.3
872,255 + MMJJ_RS04670 0.73 +0.4
872,379 + MMJJ_RS04670 0.84 -1.4
872,379 + MMJJ_RS04670 0.84 -1.9
872,440 - MMJJ_RS04670 0.90 -3.1
872,526 - -1.6
872,545 - -0.9
872,559 - -0.2
872,591 - -0.9
872,883 - MMJJ_RS04675 0.21 -0.6
872,884 + MMJJ_RS04675 0.21 -0.4
872,884 + MMJJ_RS04675 0.21 -1.1
872,885 - MMJJ_RS04675 0.21 -2.2
872,898 - MMJJ_RS04675 0.22 -0.2
872,944 + MMJJ_RS04675 0.25 -2.1
872,985 - MMJJ_RS04675 0.27 -1.9
872,985 - -1.2
872,988 + MMJJ_RS04675 0.27 -1.2
873,047 - MMJJ_RS04675 0.31 +0.2
873,248 - MMJJ_RS04675 0.45 -1.6
873,322 - MMJJ_RS04675 0.50 -1.4
873,384 - MMJJ_RS04675 0.54 -0.8
873,390 + MMJJ_RS04675 0.54 -0.2
873,414 + MMJJ_RS04675 0.56 -0.9
873,422 + MMJJ_RS04675 0.56 +0.2
873,426 + MMJJ_RS04675 0.57 -1.2
873,430 - MMJJ_RS04675 0.57 -2.1
873,440 - MMJJ_RS04675 0.58 -1.4
873,456 + MMJJ_RS04675 0.59 -1.6
873,471 + MMJJ_RS04675 0.60 -1.6
873,481 - MMJJ_RS04675 0.60 -1.2
873,482 + MMJJ_RS04675 0.60 -2.9

Or see this region's nucleotide sequence