Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00460

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00455 and MMJJ_RS00460 are separated by 28 nucleotidesMMJJ_RS00460 and MMJJ_RS00465 are separated by 9 nucleotidesMMJJ_RS00465 and MMJJ_RS00470 are separated by 300 nucleotides MMJJ_RS00455: MMJJ_RS00455 - NOG1 family protein, at 81,532 to 82,569 _RS00455 MMJJ_RS00460: MMJJ_RS00460 - selenouridine synthase SelU-like subunit, at 82,598 to 83,251 _RS00460 MMJJ_RS00465: MMJJ_RS00465 - selenouridine synthase SelU-like subunit, at 83,261 to 83,920 _RS00465 MMJJ_RS00470: MMJJ_RS00470 - SBBP repeat-containing protein, at 84,221 to 87,292 _RS00470 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1at 81.900 kb on - strandat 82.229 kb on + strand, within MMJJ_RS00455at 82.430 kb on - strand, within MMJJ_RS00455at 82.509 kb on + strandat 82.523 kb on - strandat 82.523 kb on - strandat 82.523 kb on - strandat 82.524 kb on + strandat 82.634 kb on - strandat 82.634 kb on - strandat 82.635 kb on + strandat 82.646 kb on - strandat 82.719 kb on + strand, within MMJJ_RS00460at 82.740 kb on + strand, within MMJJ_RS00460at 82.784 kb on - strand, within MMJJ_RS00460at 82.784 kb on - strand, within MMJJ_RS00460at 82.851 kb on - strand, within MMJJ_RS00460at 82.875 kb on + strand, within MMJJ_RS00460at 82.937 kb on - strand, within MMJJ_RS00460at 82.938 kb on + strand, within MMJJ_RS00460at 82.982 kb on + strand, within MMJJ_RS00460at 83.027 kb on + strand, within MMJJ_RS00460at 83.110 kb on - strand, within MMJJ_RS00460at 83.222 kb on + strandat 83.302 kb on + strandat 83.352 kb on + strand, within MMJJ_RS00465at 83.363 kb on - strand, within MMJJ_RS00465at 83.430 kb on - strand, within MMJJ_RS00465at 83.460 kb on + strand, within MMJJ_RS00465at 83.612 kb on - strand, within MMJJ_RS00465at 83.612 kb on - strand, within MMJJ_RS00465at 83.612 kb on - strand, within MMJJ_RS00465at 83.613 kb on + strand, within MMJJ_RS00465at 83.613 kb on + strand, within MMJJ_RS00465at 83.613 kb on + strand, within MMJJ_RS00465at 83.613 kb on + strand, within MMJJ_RS00465at 83.613 kb on + strand, within MMJJ_RS00465at 83.614 kb on - strand, within MMJJ_RS00465at 83.614 kb on - strand, within MMJJ_RS00465at 83.614 kb on - strand, within MMJJ_RS00465at 83.615 kb on + strand, within MMJJ_RS00465at 83.619 kb on - strand, within MMJJ_RS00465at 83.626 kb on + strand, within MMJJ_RS00465at 83.626 kb on + strand, within MMJJ_RS00465at 83.660 kb on - strand, within MMJJ_RS00465at 83.660 kb on - strand, within MMJJ_RS00465at 83.660 kb on - strand, within MMJJ_RS00465at 83.661 kb on + strand, within MMJJ_RS00465at 83.665 kb on - strand, within MMJJ_RS00465at 83.665 kb on - strand, within MMJJ_RS00465at 83.666 kb on + strand, within MMJJ_RS00465at 83.702 kb on - strand, within MMJJ_RS00465at 83.703 kb on + strand, within MMJJ_RS00465at 83.717 kb on + strand, within MMJJ_RS00465at 83.780 kb on - strand, within MMJJ_RS00465at 83.812 kb on - strand, within MMJJ_RS00465at 83.840 kb on - strand, within MMJJ_RS00465at 83.841 kb on + strand, within MMJJ_RS00465at 83.841 kb on + strand, within MMJJ_RS00465at 83.841 kb on + strand, within MMJJ_RS00465at 83.848 kb on + strand, within MMJJ_RS00465at 83.925 kb on + strandat 83.935 kb on - strandat 83.990 kb on - strandat 84.010 kb on + strandat 84.010 kb on + strandat 84.037 kb on + strandat 84.041 kb on - strandat 84.041 kb on - strandat 84.041 kb on - strandat 84.042 kb on + strandat 84.073 kb on + strandat 84.163 kb on + strandat 84.166 kb on + strandat 84.166 kb on + strandat 84.176 kb on - strandat 84.176 kb on - strandat 84.177 kb on + strandat 84.179 kb on - strandat 84.180 kb on + strandat 84.180 kb on + strandat 84.181 kb on - strandat 84.181 kb on - strandat 84.182 kb on + strandat 84.182 kb on + strandat 84.189 kb on + strandat 84.193 kb on - strandat 84.193 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.196 kb on - strandat 84.229 kb on + strandat 84.229 kb on + strandat 84.233 kb on - strandat 84.234 kb on + strandat 84.241 kb on + strandat 84.241 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
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81,900 - -0.3
82,229 + MMJJ_RS00455 0.67 -2.0
82,430 - MMJJ_RS00455 0.87 -1.0
82,509 + -0.4
82,523 - +0.5
82,523 - +0.9
82,523 - +0.1
82,524 + -1.1
82,634 - +0.4
82,634 - +0.5
82,635 + +0.2
82,646 - +0.3
82,719 + MMJJ_RS00460 0.19 +0.5
82,740 + MMJJ_RS00460 0.22 +0.2
82,784 - MMJJ_RS00460 0.28 +0.5
82,784 - MMJJ_RS00460 0.28 +0.8
82,851 - MMJJ_RS00460 0.39 +0.3
82,875 + MMJJ_RS00460 0.42 -0.4
82,937 - MMJJ_RS00460 0.52 -0.1
82,938 + MMJJ_RS00460 0.52 -0.3
82,982 + MMJJ_RS00460 0.59 +0.3
83,027 + MMJJ_RS00460 0.66 -0.3
83,110 - MMJJ_RS00460 0.78 +0.1
83,222 + -0.6
83,302 + -0.1
83,352 + MMJJ_RS00465 0.14 +0.0
83,363 - MMJJ_RS00465 0.15 -0.5
83,430 - MMJJ_RS00465 0.26 +0.3
83,460 + MMJJ_RS00465 0.30 -0.3
83,612 - MMJJ_RS00465 0.53 -0.1
83,612 - MMJJ_RS00465 0.53 -0.8
83,612 - MMJJ_RS00465 0.53 +0.5
83,613 + MMJJ_RS00465 0.53 -1.3
83,613 + MMJJ_RS00465 0.53 -0.7
83,613 + MMJJ_RS00465 0.53 -0.8
83,613 + MMJJ_RS00465 0.53 +0.4
83,613 + MMJJ_RS00465 0.53 +0.4
83,614 - MMJJ_RS00465 0.53 +0.4
83,614 - MMJJ_RS00465 0.53 -1.5
83,614 - MMJJ_RS00465 0.53 -0.3
83,615 + MMJJ_RS00465 0.54 -0.1
83,619 - MMJJ_RS00465 0.54 +0.6
83,626 + MMJJ_RS00465 0.55 +0.8
83,626 + MMJJ_RS00465 0.55 -0.7
83,660 - MMJJ_RS00465 0.60 +0.1
83,660 - MMJJ_RS00465 0.60 +0.3
83,660 - MMJJ_RS00465 0.60 +0.6
83,661 + MMJJ_RS00465 0.61 -0.5
83,665 - MMJJ_RS00465 0.61 +0.5
83,665 - MMJJ_RS00465 0.61 -1.0
83,666 + MMJJ_RS00465 0.61 -0.2
83,702 - MMJJ_RS00465 0.67 -0.0
83,703 + MMJJ_RS00465 0.67 +0.7
83,717 + MMJJ_RS00465 0.69 +0.1
83,780 - MMJJ_RS00465 0.79 -0.6
83,812 - MMJJ_RS00465 0.83 +0.2
83,840 - MMJJ_RS00465 0.88 +1.4
83,841 + MMJJ_RS00465 0.88 +0.0
83,841 + MMJJ_RS00465 0.88 -0.3
83,841 + MMJJ_RS00465 0.88 +0.1
83,848 + MMJJ_RS00465 0.89 -0.0
83,925 + -0.0
83,935 - +0.7
83,990 - +0.2
84,010 + -1.4
84,010 + +1.2
84,037 + -0.0
84,041 - -0.1
84,041 - +0.7
84,041 - +1.3
84,042 + +0.2
84,073 + +0.6
84,163 + +0.6
84,166 + -0.0
84,166 + +0.2
84,176 - +0.6
84,176 - +1.0
84,177 + +0.1
84,179 - +1.1
84,180 + -1.3
84,180 + -0.6
84,181 - -0.2
84,181 - +0.3
84,182 + +0.4
84,182 + +0.5
84,189 + +0.6
84,193 - +0.5
84,193 - -0.7
84,196 - -0.3
84,196 - +0.6
84,196 - -0.3
84,196 - +0.4
84,196 - -3.6
84,196 - +0.7
84,196 - +0.0
84,229 + -0.0
84,229 + +0.8
84,233 - +0.3
84,234 + -0.1
84,241 + +0.3
84,241 + -0.4

Or see this region's nucleotide sequence