Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24355 and CA265_RS24360 are separated by 6 nucleotides CA265_RS24360 and CA265_RS24365 are separated by 6 nucleotides CA265_RS24365 and CA265_RS24370 are separated by 49 nucleotides CA265_RS24370 and CA265_RS24375 are separated by 212 nucleotides CA265_RS24375 and CA265_RS24380 are separated by 5 nucleotides
CA265_RS24355: CA265_RS24355 - transcriptional regulator, at 5,932,291 to 5,932,614
_RS24355
CA265_RS24360: CA265_RS24360 - ATPase, at 5,932,621 to 5,933,088
_RS24360
CA265_RS24365: CA265_RS24365 - DoxX-like family protein, at 5,933,095 to 5,933,478
_RS24365
CA265_RS24370: CA265_RS24370 - hypothetical protein, at 5,933,528 to 5,934,112
_RS24370
CA265_RS24375: CA265_RS24375 - hypothetical protein, at 5,934,325 to 5,934,540
_RS24375
CA265_RS24380: CA265_RS24380 - hypothetical protein, at 5,934,546 to 5,935,121
_RS24380
Position (kb) 5933
5934
5935 Strain fitness (log2 ratio) -1
0
1 at 5932.584 kb on + strand at 5932.584 kb on + strand at 5932.617 kb on + strand at 5932.617 kb on + strand at 5932.618 kb on - strand at 5932.717 kb on + strand, within CA265_RS24360 at 5932.718 kb on - strand, within CA265_RS24360 at 5932.783 kb on + strand, within CA265_RS24360 at 5932.793 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.851 kb on - strand, within CA265_RS24360 at 5932.888 kb on + strand, within CA265_RS24360 at 5932.962 kb on + strand, within CA265_RS24360 at 5933.016 kb on - strand, within CA265_RS24360 at 5933.041 kb on - strand, within CA265_RS24360 at 5933.081 kb on + strand at 5933.082 kb on - strand at 5933.115 kb on + strand at 5933.147 kb on + strand, within CA265_RS24365 at 5933.199 kb on - strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.204 kb on + strand, within CA265_RS24365 at 5933.231 kb on - strand, within CA265_RS24365 at 5933.241 kb on + strand, within CA265_RS24365 at 5933.242 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.244 kb on - strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.408 kb on + strand, within CA265_RS24365 at 5933.491 kb on + strand at 5933.492 kb on - strand at 5933.660 kb on - strand, within CA265_RS24370 at 5933.989 kb on - strand, within CA265_RS24370 at 5934.012 kb on - strand, within CA265_RS24370 at 5934.026 kb on - strand, within CA265_RS24370 at 5934.176 kb on + strand at 5934.203 kb on + strand at 5934.551 kb on + strand at 5934.609 kb on - strand, within CA265_RS24380 at 5934.727 kb on + strand, within CA265_RS24380 at 5934.777 kb on + strand, within CA265_RS24380 at 5934.778 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.827 kb on - strand, within CA265_RS24380 at 5934.848 kb on - strand, within CA265_RS24380 at 5934.886 kb on + strand, within CA265_RS24380 at 5934.887 kb on - strand, within CA265_RS24380 at 5934.890 kb on + strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.891 kb on - strand, within CA265_RS24380 at 5934.933 kb on + strand, within CA265_RS24380 at 5935.080 kb on + strand at 5935.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,932,584 + +0.3 5,932,584 + +0.5 5,932,617 + -0.1 5,932,617 + -0.2 5,932,618 - -0.4 5,932,717 + CA265_RS24360 0.21 -1.4 5,932,718 - CA265_RS24360 0.21 +0.1 5,932,783 + CA265_RS24360 0.35 -0.1 5,932,793 - CA265_RS24360 0.37 +0.3 5,932,851 - CA265_RS24360 0.49 -1.1 5,932,851 - CA265_RS24360 0.49 -0.1 5,932,888 + CA265_RS24360 0.57 -1.2 5,932,962 + CA265_RS24360 0.73 +0.8 5,933,016 - CA265_RS24360 0.84 -0.8 5,933,041 - CA265_RS24360 0.90 -1.0 5,933,081 + +0.1 5,933,082 - +0.2 5,933,115 + -0.4 5,933,147 + CA265_RS24365 0.14 +0.3 5,933,199 - CA265_RS24365 0.27 +1.4 5,933,204 + CA265_RS24365 0.28 -0.5 5,933,204 + CA265_RS24365 0.28 -0.9 5,933,231 - CA265_RS24365 0.35 +0.2 5,933,241 + CA265_RS24365 0.38 -1.2 5,933,242 - CA265_RS24365 0.38 -0.5 5,933,244 - CA265_RS24365 0.39 -0.2 5,933,244 - CA265_RS24365 0.39 +1.2 5,933,408 + CA265_RS24365 0.82 -0.9 5,933,408 + CA265_RS24365 0.82 -0.6 5,933,408 + CA265_RS24365 0.82 -0.9 5,933,491 + -0.5 5,933,492 - +0.6 5,933,660 - CA265_RS24370 0.23 -1.5 5,933,989 - CA265_RS24370 0.79 +0.2 5,934,012 - CA265_RS24370 0.83 +0.5 5,934,026 - CA265_RS24370 0.85 +0.3 5,934,176 + +0.3 5,934,203 + -1.5 5,934,551 + -1.3 5,934,609 - CA265_RS24380 0.11 +0.3 5,934,727 + CA265_RS24380 0.31 -0.0 5,934,777 + CA265_RS24380 0.40 +1.2 5,934,778 - CA265_RS24380 0.40 +0.5 5,934,827 - CA265_RS24380 0.49 -0.0 5,934,827 - CA265_RS24380 0.49 -0.3 5,934,848 - CA265_RS24380 0.52 -0.4 5,934,886 + CA265_RS24380 0.59 -0.0 5,934,887 - CA265_RS24380 0.59 +0.4 5,934,890 + CA265_RS24380 0.60 +0.2 5,934,891 - CA265_RS24380 0.60 +0.1 5,934,891 - CA265_RS24380 0.60 -0.6 5,934,933 + CA265_RS24380 0.67 +0.5 5,935,080 + +0.3 5,935,084 - +0.4
Or see this region's nucleotide sequence