Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS22965

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS22960 and CA265_RS22965 are separated by 73 nucleotidesCA265_RS22965 and CA265_RS22970 overlap by 4 nucleotidesCA265_RS22970 and CA265_RS22975 are separated by 170 nucleotides CA265_RS22960: CA265_RS22960 - hypothetical protein, at 5,619,616 to 5,621,058 _RS22960 CA265_RS22965: CA265_RS22965 - leucyl/phenylalanyl-tRNA--protein transferase, at 5,621,132 to 5,621,764 _RS22965 CA265_RS22970: CA265_RS22970 - hypothetical protein, at 5,621,761 to 5,622,357 _RS22970 CA265_RS22975: CA265_RS22975 - 3-keto-alpha-glucoside 1,2-lyase (from data), at 5,622,528 to 5,623,310 _RS22975 Position (kb) 5621 5622Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5620.132 kb on + strand, within CA265_RS22960at 5620.196 kb on + strand, within CA265_RS22960at 5620.219 kb on - strand, within CA265_RS22960at 5620.231 kb on - strand, within CA265_RS22960at 5620.425 kb on - strand, within CA265_RS22960at 5620.458 kb on + strand, within CA265_RS22960at 5620.476 kb on - strand, within CA265_RS22960at 5620.536 kb on + strand, within CA265_RS22960at 5620.588 kb on - strand, within CA265_RS22960at 5620.642 kb on - strand, within CA265_RS22960at 5620.648 kb on + strand, within CA265_RS22960at 5620.764 kb on + strand, within CA265_RS22960at 5620.850 kb on + strand, within CA265_RS22960at 5620.850 kb on + strand, within CA265_RS22960at 5621.059 kb on - strandat 5621.121 kb on + strandat 5621.220 kb on + strand, within CA265_RS22965at 5621.224 kb on + strand, within CA265_RS22965at 5621.260 kb on - strand, within CA265_RS22965at 5621.260 kb on - strand, within CA265_RS22965at 5621.273 kb on - strand, within CA265_RS22965at 5621.320 kb on - strand, within CA265_RS22965at 5621.513 kb on + strand, within CA265_RS22965at 5621.564 kb on + strand, within CA265_RS22965at 5621.577 kb on + strand, within CA265_RS22965at 5621.603 kb on - strand, within CA265_RS22965at 5621.609 kb on - strand, within CA265_RS22965at 5621.616 kb on + strand, within CA265_RS22965at 5621.616 kb on + strand, within CA265_RS22965at 5621.617 kb on - strand, within CA265_RS22965at 5621.621 kb on - strand, within CA265_RS22965at 5621.671 kb on - strand, within CA265_RS22965at 5621.710 kb on - strandat 5621.741 kb on - strandat 5621.747 kb on - strandat 5621.747 kb on - strandat 5621.769 kb on + strandat 5621.788 kb on + strandat 5621.788 kb on + strandat 5621.788 kb on + strandat 5621.789 kb on - strandat 5621.789 kb on - strandat 5621.789 kb on - strandat 5621.790 kb on + strandat 5621.839 kb on + strand, within CA265_RS22970at 5621.839 kb on + strand, within CA265_RS22970at 5621.840 kb on - strand, within CA265_RS22970at 5621.844 kb on - strand, within CA265_RS22970at 5621.878 kb on - strand, within CA265_RS22970at 5621.922 kb on + strand, within CA265_RS22970at 5621.926 kb on - strand, within CA265_RS22970at 5621.995 kb on + strand, within CA265_RS22970at 5621.996 kb on - strand, within CA265_RS22970at 5621.999 kb on + strand, within CA265_RS22970at 5622.000 kb on - strand, within CA265_RS22970at 5622.027 kb on + strand, within CA265_RS22970at 5622.196 kb on + strand, within CA265_RS22970at 5622.197 kb on - strand, within CA265_RS22970at 5622.197 kb on - strand, within CA265_RS22970at 5622.197 kb on - strand, within CA265_RS22970at 5622.197 kb on - strand, within CA265_RS22970at 5622.200 kb on + strand, within CA265_RS22970at 5622.218 kb on + strand, within CA265_RS22970at 5622.218 kb on + strand, within CA265_RS22970at 5622.282 kb on + strand, within CA265_RS22970at 5622.283 kb on - strand, within CA265_RS22970at 5622.320 kb on - strandat 5622.331 kb on - strandat 5622.405 kb on - strandat 5622.406 kb on + strandat 5622.509 kb on + strandat 5622.529 kb on + strandat 5622.639 kb on - strand, within CA265_RS22975at 5622.640 kb on + strand, within CA265_RS22975at 5622.660 kb on + strand, within CA265_RS22975at 5622.738 kb on - strand, within CA265_RS22975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
5,620,132 + CA265_RS22960 0.36 +1.4
5,620,196 + CA265_RS22960 0.40 -0.0
5,620,219 - CA265_RS22960 0.42 -0.6
5,620,231 - CA265_RS22960 0.43 +1.5
5,620,425 - CA265_RS22960 0.56 +1.0
5,620,458 + CA265_RS22960 0.58 -0.1
5,620,476 - CA265_RS22960 0.60 -0.5
5,620,536 + CA265_RS22960 0.64 +0.4
5,620,588 - CA265_RS22960 0.67 -0.1
5,620,642 - CA265_RS22960 0.71 -0.9
5,620,648 + CA265_RS22960 0.72 -0.2
5,620,764 + CA265_RS22960 0.80 +0.8
5,620,850 + CA265_RS22960 0.86 -0.3
5,620,850 + CA265_RS22960 0.86 -0.1
5,621,059 - -2.5
5,621,121 + +1.1
5,621,220 + CA265_RS22965 0.14 -2.5
5,621,224 + CA265_RS22965 0.15 +0.5
5,621,260 - CA265_RS22965 0.20 +0.4
5,621,260 - CA265_RS22965 0.20 -0.2
5,621,273 - CA265_RS22965 0.22 +0.6
5,621,320 - CA265_RS22965 0.30 +0.6
5,621,513 + CA265_RS22965 0.60 +0.0
5,621,564 + CA265_RS22965 0.68 -0.0
5,621,577 + CA265_RS22965 0.70 -0.1
5,621,603 - CA265_RS22965 0.74 +2.8
5,621,609 - CA265_RS22965 0.75 +2.2
5,621,616 + CA265_RS22965 0.76 -1.0
5,621,616 + CA265_RS22965 0.76 +0.5
5,621,617 - CA265_RS22965 0.77 +1.4
5,621,621 - CA265_RS22965 0.77 +0.4
5,621,671 - CA265_RS22965 0.85 +0.6
5,621,710 - -0.7
5,621,741 - -0.9
5,621,747 - -0.1
5,621,747 - -0.0
5,621,769 + +0.3
5,621,788 + -0.1
5,621,788 + -0.0
5,621,788 + +0.6
5,621,789 - +0.5
5,621,789 - +0.4
5,621,789 - -0.2
5,621,790 + +0.8
5,621,839 + CA265_RS22970 0.13 -0.3
5,621,839 + CA265_RS22970 0.13 +0.5
5,621,840 - CA265_RS22970 0.13 +0.6
5,621,844 - CA265_RS22970 0.14 +1.4
5,621,878 - CA265_RS22970 0.20 +0.1
5,621,922 + CA265_RS22970 0.27 +0.6
5,621,926 - CA265_RS22970 0.28 +0.2
5,621,995 + CA265_RS22970 0.39 +0.0
5,621,996 - CA265_RS22970 0.39 +0.3
5,621,999 + CA265_RS22970 0.40 -1.2
5,622,000 - CA265_RS22970 0.40 -0.3
5,622,027 + CA265_RS22970 0.45 -0.7
5,622,196 + CA265_RS22970 0.73 -0.4
5,622,197 - CA265_RS22970 0.73 -1.4
5,622,197 - CA265_RS22970 0.73 +1.0
5,622,197 - CA265_RS22970 0.73 -0.1
5,622,197 - CA265_RS22970 0.73 -0.4
5,622,200 + CA265_RS22970 0.74 -0.4
5,622,218 + CA265_RS22970 0.77 -0.6
5,622,218 + CA265_RS22970 0.77 +0.7
5,622,282 + CA265_RS22970 0.87 -1.0
5,622,283 - CA265_RS22970 0.87 -0.2
5,622,320 - +0.3
5,622,331 - -1.9
5,622,405 - +0.9
5,622,406 + +0.6
5,622,509 + -1.3
5,622,529 + -1.0
5,622,639 - CA265_RS22975 0.14 +1.3
5,622,640 + CA265_RS22975 0.14 +0.5
5,622,660 + CA265_RS22975 0.17 +1.5
5,622,738 - CA265_RS22975 0.27 +0.1

Or see this region's nucleotide sequence