Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22590 and CA265_RS22595 overlap by 10 nucleotides CA265_RS22595 and CA265_RS22600 are separated by 5 nucleotides CA265_RS22600 and CA265_RS22605 are separated by 75 nucleotides
CA265_RS22590: CA265_RS22590 - hypothetical protein, at 5,534,571 to 5,535,308
_RS22590
CA265_RS22595: CA265_RS22595 - methyltransferase type 11, at 5,535,299 to 5,536,051
_RS22595
CA265_RS22600: CA265_RS22600 - hypothetical protein, at 5,536,057 to 5,536,464
_RS22600
CA265_RS22605: CA265_RS22605 - phosphoribosylamine--glycine ligase, at 5,536,540 to 5,537,811
_RS22605
Position (kb) 5536
5537 Strain fitness (log2 ratio) -1
0
1
2
3 at 5535.112 kb on - strand, within CA265_RS22590 at 5535.195 kb on - strand, within CA265_RS22590 at 5535.270 kb on + strand at 5535.349 kb on + strand at 5535.363 kb on - strand at 5535.366 kb on + strand at 5535.412 kb on - strand, within CA265_RS22595 at 5535.412 kb on - strand, within CA265_RS22595 at 5535.428 kb on - strand, within CA265_RS22595 at 5535.450 kb on + strand, within CA265_RS22595 at 5535.494 kb on + strand, within CA265_RS22595 at 5535.516 kb on - strand, within CA265_RS22595 at 5535.550 kb on + strand, within CA265_RS22595 at 5535.570 kb on + strand, within CA265_RS22595 at 5535.571 kb on - strand, within CA265_RS22595 at 5535.576 kb on + strand, within CA265_RS22595 at 5535.576 kb on + strand, within CA265_RS22595 at 5535.580 kb on + strand, within CA265_RS22595 at 5535.642 kb on + strand, within CA265_RS22595 at 5535.676 kb on + strand, within CA265_RS22595 at 5535.677 kb on - strand, within CA265_RS22595 at 5535.714 kb on + strand, within CA265_RS22595 at 5535.714 kb on + strand, within CA265_RS22595 at 5535.715 kb on - strand, within CA265_RS22595 at 5535.717 kb on + strand, within CA265_RS22595 at 5535.783 kb on + strand, within CA265_RS22595 at 5535.783 kb on + strand, within CA265_RS22595 at 5535.784 kb on - strand, within CA265_RS22595 at 5535.853 kb on + strand, within CA265_RS22595 at 5535.854 kb on - strand, within CA265_RS22595 at 5535.879 kb on + strand, within CA265_RS22595 at 5535.883 kb on + strand, within CA265_RS22595 at 5535.884 kb on - strand, within CA265_RS22595 at 5535.938 kb on - strand, within CA265_RS22595 at 5536.024 kb on + strand at 5536.054 kb on + strand at 5536.065 kb on - strand at 5536.071 kb on - strand at 5536.077 kb on - strand at 5536.152 kb on + strand, within CA265_RS22600 at 5536.169 kb on + strand, within CA265_RS22600 at 5536.217 kb on + strand, within CA265_RS22600 at 5536.232 kb on + strand, within CA265_RS22600 at 5536.232 kb on + strand, within CA265_RS22600 at 5536.241 kb on + strand, within CA265_RS22600 at 5536.262 kb on + strand, within CA265_RS22600 at 5536.266 kb on + strand, within CA265_RS22600 at 5536.266 kb on + strand, within CA265_RS22600 at 5536.267 kb on - strand, within CA265_RS22600 at 5536.287 kb on - strand, within CA265_RS22600 at 5536.366 kb on - strand, within CA265_RS22600 at 5536.384 kb on - strand, within CA265_RS22600 at 5536.384 kb on - strand, within CA265_RS22600 at 5536.420 kb on - strand, within CA265_RS22600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,535,112 - CA265_RS22590 0.73 -0.6 5,535,195 - CA265_RS22590 0.85 +0.5 5,535,270 + -1.7 5,535,349 + +1.0 5,535,363 - +0.4 5,535,366 + +0.2 5,535,412 - CA265_RS22595 0.15 +0.8 5,535,412 - CA265_RS22595 0.15 -0.0 5,535,428 - CA265_RS22595 0.17 +0.3 5,535,450 + CA265_RS22595 0.20 -0.6 5,535,494 + CA265_RS22595 0.26 +0.8 5,535,516 - CA265_RS22595 0.29 +0.3 5,535,550 + CA265_RS22595 0.33 +0.3 5,535,570 + CA265_RS22595 0.36 -0.1 5,535,571 - CA265_RS22595 0.36 -0.1 5,535,576 + CA265_RS22595 0.37 +0.3 5,535,576 + CA265_RS22595 0.37 +1.1 5,535,580 + CA265_RS22595 0.37 +0.7 5,535,642 + CA265_RS22595 0.46 +0.1 5,535,676 + CA265_RS22595 0.50 +0.6 5,535,677 - CA265_RS22595 0.50 -0.9 5,535,714 + CA265_RS22595 0.55 +0.1 5,535,714 + CA265_RS22595 0.55 +0.4 5,535,715 - CA265_RS22595 0.55 +2.9 5,535,717 + CA265_RS22595 0.56 -0.1 5,535,783 + CA265_RS22595 0.64 +0.8 5,535,783 + CA265_RS22595 0.64 +1.2 5,535,784 - CA265_RS22595 0.64 +0.2 5,535,853 + CA265_RS22595 0.74 +0.1 5,535,854 - CA265_RS22595 0.74 +0.6 5,535,879 + CA265_RS22595 0.77 +0.7 5,535,883 + CA265_RS22595 0.78 -0.4 5,535,884 - CA265_RS22595 0.78 +0.7 5,535,938 - CA265_RS22595 0.85 -0.2 5,536,024 + -0.5 5,536,054 + -0.5 5,536,065 - +0.8 5,536,071 - +1.5 5,536,077 - -0.2 5,536,152 + CA265_RS22600 0.23 +1.1 5,536,169 + CA265_RS22600 0.27 +0.3 5,536,217 + CA265_RS22600 0.39 +0.1 5,536,232 + CA265_RS22600 0.43 +1.4 5,536,232 + CA265_RS22600 0.43 +1.0 5,536,241 + CA265_RS22600 0.45 -0.0 5,536,262 + CA265_RS22600 0.50 +0.4 5,536,266 + CA265_RS22600 0.51 -0.2 5,536,266 + CA265_RS22600 0.51 +0.9 5,536,267 - CA265_RS22600 0.51 +0.3 5,536,287 - CA265_RS22600 0.56 +0.4 5,536,366 - CA265_RS22600 0.76 +0.5 5,536,384 - CA265_RS22600 0.80 -1.6 5,536,384 - CA265_RS22600 0.80 +0.5 5,536,420 - CA265_RS22600 0.89 +0.0
Or see this region's nucleotide sequence