Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21460 and CA265_RS21465 are separated by 122 nucleotides CA265_RS21465 and CA265_RS21470 are separated by 131 nucleotides CA265_RS21470 and CA265_RS21475 are separated by 437 nucleotides
CA265_RS21460: CA265_RS21460 - 5-formyltetrahydrofolate cyclo-ligase, at 5,288,073 to 5,288,633
_RS21460
CA265_RS21465: CA265_RS21465 - elongation factor P, at 5,288,756 to 5,289,316
_RS21465
CA265_RS21470: CA265_RS21470 - elongation factor P, at 5,289,448 to 5,290,008
_RS21470
CA265_RS21475: CA265_RS21475 - ABC transporter ATP-binding protein, at 5,290,446 to 5,291,072
_RS21475
Position (kb) 5289
5290
5291 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5288.455 kb on - strand, within CA265_RS21460 at 5288.503 kb on - strand, within CA265_RS21460 at 5288.503 kb on - strand, within CA265_RS21460 at 5288.587 kb on - strand at 5288.589 kb on + strand at 5288.589 kb on + strand at 5288.654 kb on + strand at 5288.749 kb on + strand at 5288.775 kb on + strand at 5288.776 kb on - strand at 5288.776 kb on - strand at 5288.855 kb on + strand, within CA265_RS21465 at 5288.887 kb on + strand, within CA265_RS21465 at 5288.888 kb on - strand, within CA265_RS21465 at 5288.888 kb on - strand, within CA265_RS21465 at 5288.914 kb on - strand, within CA265_RS21465 at 5288.917 kb on + strand, within CA265_RS21465 at 5288.983 kb on + strand, within CA265_RS21465 at 5288.984 kb on - strand, within CA265_RS21465 at 5289.026 kb on + strand, within CA265_RS21465 at 5289.058 kb on + strand, within CA265_RS21465 at 5289.081 kb on + strand, within CA265_RS21465 at 5289.097 kb on - strand, within CA265_RS21465 at 5289.157 kb on + strand, within CA265_RS21465 at 5289.157 kb on + strand, within CA265_RS21465 at 5289.158 kb on - strand, within CA265_RS21465 at 5289.232 kb on + strand, within CA265_RS21465 at 5289.321 kb on + strand at 5289.322 kb on - strand at 5289.341 kb on - strand at 5289.342 kb on + strand at 5289.343 kb on - strand at 5289.375 kb on + strand at 5289.408 kb on + strand at 5289.408 kb on + strand at 5289.408 kb on + strand at 5289.580 kb on - strand, within CA265_RS21470 at 5289.605 kb on + strand, within CA265_RS21470 at 5289.623 kb on - strand, within CA265_RS21470 at 5289.676 kb on + strand, within CA265_RS21470 at 5289.684 kb on + strand, within CA265_RS21470 at 5289.737 kb on + strand, within CA265_RS21470 at 5289.737 kb on + strand, within CA265_RS21470 at 5289.738 kb on - strand, within CA265_RS21470 at 5289.788 kb on + strand, within CA265_RS21470 at 5289.800 kb on + strand, within CA265_RS21470 at 5289.854 kb on + strand, within CA265_RS21470 at 5289.877 kb on + strand, within CA265_RS21470 at 5289.878 kb on - strand, within CA265_RS21470 at 5289.944 kb on - strand, within CA265_RS21470 at 5290.013 kb on + strand at 5290.016 kb on + strand at 5290.071 kb on - strand at 5290.074 kb on - strand at 5290.076 kb on + strand at 5290.101 kb on + strand at 5290.102 kb on - strand at 5290.212 kb on + strand at 5290.270 kb on + strand at 5290.271 kb on - strand at 5290.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,288,455 - CA265_RS21460 0.68 -0.4 5,288,503 - CA265_RS21460 0.77 +0.6 5,288,503 - CA265_RS21460 0.77 -0.9 5,288,587 - +0.0 5,288,589 + +0.4 5,288,589 + -0.2 5,288,654 + +1.9 5,288,749 + -0.6 5,288,775 + +0.8 5,288,776 - +1.9 5,288,776 - +0.8 5,288,855 + CA265_RS21465 0.18 +0.3 5,288,887 + CA265_RS21465 0.23 +0.5 5,288,888 - CA265_RS21465 0.24 -1.8 5,288,888 - CA265_RS21465 0.24 +0.6 5,288,914 - CA265_RS21465 0.28 -0.5 5,288,917 + CA265_RS21465 0.29 -0.2 5,288,983 + CA265_RS21465 0.40 +0.7 5,288,984 - CA265_RS21465 0.41 +0.4 5,289,026 + CA265_RS21465 0.48 -0.0 5,289,058 + CA265_RS21465 0.54 +0.1 5,289,081 + CA265_RS21465 0.58 +0.2 5,289,097 - CA265_RS21465 0.61 -1.4 5,289,157 + CA265_RS21465 0.71 +0.2 5,289,157 + CA265_RS21465 0.71 -1.0 5,289,158 - CA265_RS21465 0.72 +0.5 5,289,232 + CA265_RS21465 0.85 +0.5 5,289,321 + +0.1 5,289,322 - -2.6 5,289,341 - -0.6 5,289,342 + +0.5 5,289,343 - -0.2 5,289,375 + -0.3 5,289,408 + -0.2 5,289,408 + +0.5 5,289,408 + -0.2 5,289,580 - CA265_RS21470 0.24 +0.1 5,289,605 + CA265_RS21470 0.28 +0.7 5,289,623 - CA265_RS21470 0.31 -2.1 5,289,676 + CA265_RS21470 0.41 -0.2 5,289,684 + CA265_RS21470 0.42 +2.1 5,289,737 + CA265_RS21470 0.52 -0.0 5,289,737 + CA265_RS21470 0.52 +1.3 5,289,738 - CA265_RS21470 0.52 -1.6 5,289,788 + CA265_RS21470 0.61 +0.5 5,289,800 + CA265_RS21470 0.63 -0.7 5,289,854 + CA265_RS21470 0.72 +1.2 5,289,877 + CA265_RS21470 0.76 +1.1 5,289,878 - CA265_RS21470 0.77 +0.7 5,289,944 - CA265_RS21470 0.88 +0.1 5,290,013 + +1.2 5,290,016 + +0.7 5,290,071 - -0.1 5,290,074 - +0.0 5,290,076 + +0.9 5,290,101 + -1.1 5,290,102 - +0.2 5,290,212 + -0.2 5,290,270 + +0.0 5,290,271 - -0.6 5,290,413 + +0.4
Or see this region's nucleotide sequence