Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21355 and CA265_RS21360 are separated by 149 nucleotides CA265_RS21360 and CA265_RS21365 overlap by 1 nucleotides CA265_RS21365 and CA265_RS21370 are separated by 14 nucleotides
CA265_RS21355: CA265_RS21355 - hypothetical protein, at 5,269,351 to 5,269,551
_RS21355
CA265_RS21360: CA265_RS21360 - hypothetical protein, at 5,269,701 to 5,269,949
_RS21360
CA265_RS21365: CA265_RS21365 - thiol reductase thioredoxin, at 5,269,949 to 5,270,257
_RS21365
CA265_RS21370: CA265_RS21370 - peroxiredoxin, at 5,270,272 to 5,270,904
_RS21370
Position (kb) 5269
5270
5271 Strain fitness (log2 ratio) -2
-1
0
1 at 5269.011 kb on + strand at 5269.030 kb on + strand at 5269.077 kb on - strand at 5269.077 kb on - strand at 5269.084 kb on + strand at 5269.092 kb on + strand at 5269.093 kb on - strand at 5269.093 kb on - strand at 5269.093 kb on - strand at 5269.116 kb on + strand at 5269.120 kb on - strand at 5269.127 kb on + strand at 5269.177 kb on - strand at 5269.209 kb on + strand at 5269.246 kb on - strand at 5269.284 kb on + strand at 5269.315 kb on + strand at 5269.315 kb on + strand at 5269.360 kb on + strand at 5269.434 kb on + strand, within CA265_RS21355 at 5269.442 kb on - strand, within CA265_RS21355 at 5269.453 kb on - strand, within CA265_RS21355 at 5269.508 kb on + strand, within CA265_RS21355 at 5269.513 kb on - strand, within CA265_RS21355 at 5269.516 kb on + strand, within CA265_RS21355 at 5269.557 kb on - strand at 5269.665 kb on + strand at 5269.666 kb on - strand at 5269.743 kb on + strand, within CA265_RS21360 at 5269.785 kb on + strand, within CA265_RS21360 at 5269.785 kb on + strand, within CA265_RS21360 at 5269.977 kb on - strand at 5270.009 kb on + strand, within CA265_RS21365 at 5270.046 kb on - strand, within CA265_RS21365 at 5270.050 kb on + strand, within CA265_RS21365 at 5270.188 kb on - strand, within CA265_RS21365 at 5270.244 kb on - strand at 5270.270 kb on - strand at 5270.402 kb on + strand, within CA265_RS21370 at 5270.572 kb on + strand, within CA265_RS21370 at 5270.587 kb on - strand, within CA265_RS21370 at 5270.604 kb on - strand, within CA265_RS21370 at 5270.607 kb on + strand, within CA265_RS21370 at 5270.607 kb on + strand, within CA265_RS21370 at 5270.640 kb on + strand, within CA265_RS21370 at 5270.641 kb on - strand, within CA265_RS21370 at 5270.645 kb on - strand, within CA265_RS21370 at 5270.671 kb on - strand, within CA265_RS21370 at 5270.671 kb on - strand, within CA265_RS21370 at 5270.697 kb on + strand, within CA265_RS21370 at 5270.789 kb on - strand, within CA265_RS21370 at 5270.825 kb on - strand, within CA265_RS21370 at 5270.938 kb on - strand at 5270.943 kb on + strand at 5270.986 kb on + strand at 5271.005 kb on - strand at 5271.082 kb on + strand at 5271.083 kb on - strand at 5271.146 kb on - strand at 5271.177 kb on + strand at 5271.181 kb on - strand at 5271.181 kb on - strand at 5271.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,269,011 + -0.9 5,269,030 + -1.0 5,269,077 - +0.1 5,269,077 - -0.6 5,269,084 + -1.1 5,269,092 + -0.7 5,269,093 - -0.1 5,269,093 - +1.1 5,269,093 - -0.3 5,269,116 + +0.1 5,269,120 - +0.7 5,269,127 + -0.3 5,269,177 - +0.0 5,269,209 + +0.7 5,269,246 - -0.8 5,269,284 + +0.6 5,269,315 + +1.1 5,269,315 + -1.4 5,269,360 + +1.2 5,269,434 + CA265_RS21355 0.41 +0.6 5,269,442 - CA265_RS21355 0.45 +0.5 5,269,453 - CA265_RS21355 0.51 -0.2 5,269,508 + CA265_RS21355 0.78 +0.8 5,269,513 - CA265_RS21355 0.81 +0.5 5,269,516 + CA265_RS21355 0.82 -0.0 5,269,557 - -0.2 5,269,665 + -0.5 5,269,666 - -1.7 5,269,743 + CA265_RS21360 0.17 -0.0 5,269,785 + CA265_RS21360 0.34 -0.7 5,269,785 + CA265_RS21360 0.34 +0.5 5,269,977 - -0.4 5,270,009 + CA265_RS21365 0.19 +0.9 5,270,046 - CA265_RS21365 0.31 +0.1 5,270,050 + CA265_RS21365 0.33 +0.6 5,270,188 - CA265_RS21365 0.77 -1.9 5,270,244 - +0.0 5,270,270 - +0.3 5,270,402 + CA265_RS21370 0.21 -0.0 5,270,572 + CA265_RS21370 0.47 +0.4 5,270,587 - CA265_RS21370 0.50 +0.3 5,270,604 - CA265_RS21370 0.52 +0.0 5,270,607 + CA265_RS21370 0.53 -0.9 5,270,607 + CA265_RS21370 0.53 +0.9 5,270,640 + CA265_RS21370 0.58 -0.6 5,270,641 - CA265_RS21370 0.58 -0.2 5,270,645 - CA265_RS21370 0.59 -0.3 5,270,671 - CA265_RS21370 0.63 -0.6 5,270,671 - CA265_RS21370 0.63 -1.7 5,270,697 + CA265_RS21370 0.67 -0.8 5,270,789 - CA265_RS21370 0.82 +0.9 5,270,825 - CA265_RS21370 0.87 -0.8 5,270,938 - +1.6 5,270,943 + +1.3 5,270,986 + -0.8 5,271,005 - -0.3 5,271,082 + +0.3 5,271,083 - -0.1 5,271,146 - -0.9 5,271,177 + +0.2 5,271,181 - -1.8 5,271,181 - -0.5 5,271,182 + -0.5
Or see this region's nucleotide sequence