Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS21295

Experiment: R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS21285 and CA265_RS21290 are separated by 105 nucleotidesCA265_RS21290 and CA265_RS21295 overlap by 50 nucleotidesCA265_RS21295 and CA265_RS21300 are separated by 290 nucleotides CA265_RS21285: CA265_RS21285 - DNA-binding response regulator, at 5,249,751 to 5,250,377 _RS21285 CA265_RS21290: CA265_RS21290 - hypothetical protein, at 5,250,483 to 5,250,848 _RS21290 CA265_RS21295: CA265_RS21295 - hypothetical protein, at 5,250,799 to 5,251,719 _RS21295 CA265_RS21300: CA265_RS21300 - hypothetical protein, at 5,252,010 to 5,255,186 _RS21300 Position (kb) 5250 5251 5252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5249.809 kb on - strandat 5249.822 kb on - strand, within CA265_RS21285at 5249.830 kb on + strand, within CA265_RS21285at 5249.831 kb on - strand, within CA265_RS21285at 5249.831 kb on - strand, within CA265_RS21285at 5249.848 kb on + strand, within CA265_RS21285at 5249.848 kb on + strand, within CA265_RS21285at 5249.856 kb on + strand, within CA265_RS21285at 5249.857 kb on - strand, within CA265_RS21285at 5249.977 kb on + strand, within CA265_RS21285at 5249.982 kb on - strand, within CA265_RS21285at 5249.991 kb on - strand, within CA265_RS21285at 5249.996 kb on + strand, within CA265_RS21285at 5250.103 kb on + strand, within CA265_RS21285at 5250.146 kb on - strand, within CA265_RS21285at 5250.193 kb on + strand, within CA265_RS21285at 5250.194 kb on - strand, within CA265_RS21285at 5250.198 kb on - strand, within CA265_RS21285at 5250.217 kb on + strand, within CA265_RS21285at 5250.218 kb on - strand, within CA265_RS21285at 5250.306 kb on - strand, within CA265_RS21285at 5250.380 kb on + strandat 5250.380 kb on + strandat 5250.380 kb on + strandat 5250.381 kb on - strandat 5250.466 kb on + strandat 5250.466 kb on + strandat 5250.466 kb on + strandat 5250.508 kb on - strandat 5250.508 kb on - strandat 5250.546 kb on + strand, within CA265_RS21290at 5250.569 kb on + strand, within CA265_RS21290at 5250.636 kb on - strand, within CA265_RS21290at 5250.703 kb on + strand, within CA265_RS21290at 5250.704 kb on - strand, within CA265_RS21290at 5250.712 kb on - strand, within CA265_RS21290at 5250.749 kb on + strand, within CA265_RS21290at 5250.763 kb on + strand, within CA265_RS21290at 5250.775 kb on + strand, within CA265_RS21290at 5250.776 kb on - strand, within CA265_RS21290at 5250.817 kb on + strandat 5250.830 kb on + strandat 5250.831 kb on - strandat 5250.941 kb on - strand, within CA265_RS21295at 5250.942 kb on + strand, within CA265_RS21295at 5250.985 kb on - strand, within CA265_RS21295at 5251.231 kb on - strand, within CA265_RS21295at 5251.231 kb on - strand, within CA265_RS21295at 5251.441 kb on + strand, within CA265_RS21295at 5251.566 kb on - strand, within CA265_RS21295at 5251.566 kb on - strand, within CA265_RS21295at 5251.600 kb on + strand, within CA265_RS21295at 5251.625 kb on + strand, within CA265_RS21295at 5251.662 kb on - strandat 5251.696 kb on + strandat 5251.698 kb on + strandat 5251.724 kb on + strandat 5251.725 kb on - strandat 5251.725 kb on - strandat 5251.754 kb on + strandat 5251.929 kb on - strandat 5251.973 kb on - strandat 5251.981 kb on - strandat 5251.981 kb on - strandat 5251.996 kb on - strandat 5252.023 kb on + strandat 5252.024 kb on - strandat 5252.026 kb on + strandat 5252.078 kb on + strandat 5252.134 kb on + strandat 5252.324 kb on - strandat 5252.324 kb on - strandat 5252.341 kb on + strand, within CA265_RS21300at 5252.348 kb on + strand, within CA265_RS21300at 5252.349 kb on - strand, within CA265_RS21300at 5252.384 kb on - strand, within CA265_RS21300at 5252.399 kb on - strand, within CA265_RS21300at 5252.399 kb on - strand, within CA265_RS21300at 5252.415 kb on - strand, within CA265_RS21300at 5252.522 kb on + strand, within CA265_RS21300at 5252.522 kb on + strand, within CA265_RS21300at 5252.554 kb on + strand, within CA265_RS21300at 5252.554 kb on + strand, within CA265_RS21300at 5252.569 kb on - strand, within CA265_RS21300at 5252.569 kb on - strand, within CA265_RS21300at 5252.569 kb on - strand, within CA265_RS21300

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A
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5,249,809 - +0.0
5,249,822 - CA265_RS21285 0.11 +0.5
5,249,830 + CA265_RS21285 0.13 -0.7
5,249,831 - CA265_RS21285 0.13 -0.2
5,249,831 - CA265_RS21285 0.13 +1.2
5,249,848 + CA265_RS21285 0.15 -0.2
5,249,848 + CA265_RS21285 0.15 +0.1
5,249,856 + CA265_RS21285 0.17 +1.3
5,249,857 - CA265_RS21285 0.17 -0.9
5,249,977 + CA265_RS21285 0.36 +0.0
5,249,982 - CA265_RS21285 0.37 -1.1
5,249,991 - CA265_RS21285 0.38 -0.1
5,249,996 + CA265_RS21285 0.39 +0.2
5,250,103 + CA265_RS21285 0.56 +0.4
5,250,146 - CA265_RS21285 0.63 +0.0
5,250,193 + CA265_RS21285 0.70 +0.0
5,250,194 - CA265_RS21285 0.71 -1.0
5,250,198 - CA265_RS21285 0.71 -0.7
5,250,217 + CA265_RS21285 0.74 -0.1
5,250,218 - CA265_RS21285 0.74 -1.0
5,250,306 - CA265_RS21285 0.89 +0.4
5,250,380 + +0.4
5,250,380 + +0.3
5,250,380 + -0.2
5,250,381 - +1.1
5,250,466 + -0.2
5,250,466 + -1.0
5,250,466 + -0.1
5,250,508 - +1.1
5,250,508 - -1.0
5,250,546 + CA265_RS21290 0.17 -0.9
5,250,569 + CA265_RS21290 0.23 +0.0
5,250,636 - CA265_RS21290 0.42 +0.1
5,250,703 + CA265_RS21290 0.60 -0.2
5,250,704 - CA265_RS21290 0.60 -0.5
5,250,712 - CA265_RS21290 0.63 -0.5
5,250,749 + CA265_RS21290 0.73 -0.9
5,250,763 + CA265_RS21290 0.77 -0.4
5,250,775 + CA265_RS21290 0.80 -0.2
5,250,776 - CA265_RS21290 0.80 +0.9
5,250,817 + -2.5
5,250,830 + -0.2
5,250,831 - +0.3
5,250,941 - CA265_RS21295 0.15 +0.3
5,250,942 + CA265_RS21295 0.16 +0.1
5,250,985 - CA265_RS21295 0.20 +1.3
5,251,231 - CA265_RS21295 0.47 +0.4
5,251,231 - CA265_RS21295 0.47 -1.1
5,251,441 + CA265_RS21295 0.70 +0.2
5,251,566 - CA265_RS21295 0.83 -0.2
5,251,566 - CA265_RS21295 0.83 +0.1
5,251,600 + CA265_RS21295 0.87 +0.5
5,251,625 + CA265_RS21295 0.90 +0.9
5,251,662 - +0.8
5,251,696 + +0.7
5,251,698 + -3.8
5,251,724 + -0.7
5,251,725 - +0.5
5,251,725 - -0.2
5,251,754 + -0.5
5,251,929 - +0.5
5,251,973 - +1.3
5,251,981 - +0.1
5,251,981 - -0.4
5,251,996 - +0.2
5,252,023 + -0.3
5,252,024 - +0.1
5,252,026 + +0.7
5,252,078 + -0.5
5,252,134 + -0.7
5,252,324 - +0.4
5,252,324 - +0.1
5,252,341 + CA265_RS21300 0.10 -2.0
5,252,348 + CA265_RS21300 0.11 -0.1
5,252,349 - CA265_RS21300 0.11 +0.8
5,252,384 - CA265_RS21300 0.12 -0.3
5,252,399 - CA265_RS21300 0.12 -0.4
5,252,399 - CA265_RS21300 0.12 -0.1
5,252,415 - CA265_RS21300 0.13 -0.1
5,252,522 + CA265_RS21300 0.16 -0.3
5,252,522 + CA265_RS21300 0.16 -0.9
5,252,554 + CA265_RS21300 0.17 +1.4
5,252,554 + CA265_RS21300 0.17 -1.5
5,252,569 - CA265_RS21300 0.18 -0.8
5,252,569 - CA265_RS21300 0.18 +0.4
5,252,569 - CA265_RS21300 0.18 +0.6

Or see this region's nucleotide sequence