Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20520 and CA265_RS20525 are separated by 4 nucleotides CA265_RS20525 and CA265_RS20530 are separated by 27 nucleotides CA265_RS20530 and CA265_RS20535 are separated by 215 nucleotides CA265_RS20535 and CA265_RS20540 are separated by 102 nucleotides
CA265_RS20520: CA265_RS20520 - hypothetical protein, at 5,080,481 to 5,081,302
_RS20520
CA265_RS20525: CA265_RS20525 - hypothetical protein, at 5,081,307 to 5,081,555
_RS20525
CA265_RS20530: CA265_RS20530 - hypothetical protein, at 5,081,583 to 5,081,780
_RS20530
CA265_RS20535: CA265_RS20535 - hypothetical protein, at 5,081,996 to 5,082,430
_RS20535
CA265_RS20540: CA265_RS20540 - hypothetical protein, at 5,082,533 to 5,083,168
_RS20540
Position (kb) 5081
5082 Strain fitness (log2 ratio) -2
-1
0
1 at 5080.348 kb on - strand at 5080.356 kb on + strand at 5080.356 kb on + strand at 5080.356 kb on + strand at 5080.357 kb on - strand at 5080.376 kb on + strand at 5080.377 kb on - strand at 5080.377 kb on - strand at 5080.382 kb on - strand at 5080.387 kb on - strand at 5080.395 kb on + strand at 5080.395 kb on + strand at 5080.472 kb on - strand at 5080.475 kb on - strand at 5080.483 kb on - strand at 5080.528 kb on + strand at 5080.528 kb on + strand at 5080.705 kb on + strand, within CA265_RS20520 at 5080.706 kb on - strand, within CA265_RS20520 at 5080.706 kb on - strand, within CA265_RS20520 at 5080.706 kb on - strand, within CA265_RS20520 at 5080.706 kb on - strand, within CA265_RS20520 at 5080.715 kb on - strand, within CA265_RS20520 at 5080.786 kb on + strand, within CA265_RS20520 at 5080.826 kb on - strand, within CA265_RS20520 at 5080.827 kb on + strand, within CA265_RS20520 at 5080.828 kb on - strand, within CA265_RS20520 at 5080.828 kb on - strand, within CA265_RS20520 at 5080.829 kb on + strand, within CA265_RS20520 at 5080.829 kb on + strand, within CA265_RS20520 at 5080.849 kb on - strand, within CA265_RS20520 at 5080.925 kb on - strand, within CA265_RS20520 at 5081.023 kb on + strand, within CA265_RS20520 at 5081.159 kb on - strand, within CA265_RS20520 at 5081.163 kb on - strand, within CA265_RS20520 at 5081.185 kb on - strand, within CA265_RS20520 at 5081.197 kb on + strand, within CA265_RS20520 at 5081.197 kb on + strand, within CA265_RS20520 at 5081.252 kb on - strand at 5081.252 kb on - strand at 5081.260 kb on + strand at 5081.292 kb on + strand at 5081.292 kb on + strand at 5081.292 kb on + strand at 5081.292 kb on + strand at 5081.295 kb on + strand at 5081.302 kb on + strand at 5081.303 kb on - strand at 5081.521 kb on + strand, within CA265_RS20525 at 5081.521 kb on + strand, within CA265_RS20525 at 5081.522 kb on - strand, within CA265_RS20525 at 5081.566 kb on + strand at 5081.744 kb on + strand, within CA265_RS20530 at 5081.770 kb on + strand at 5081.770 kb on + strand at 5081.800 kb on + strand at 5081.814 kb on + strand at 5081.858 kb on + strand at 5081.864 kb on + strand at 5081.891 kb on + strand at 5081.891 kb on + strand at 5081.893 kb on + strand at 5081.894 kb on - strand at 5081.902 kb on + strand at 5081.902 kb on + strand at 5081.902 kb on + strand at 5081.903 kb on - strand at 5081.903 kb on - strand at 5081.907 kb on + strand at 5081.915 kb on + strand at 5081.966 kb on - strand at 5081.966 kb on - strand at 5082.031 kb on - strand at 5082.111 kb on - strand, within CA265_RS20535 at 5082.212 kb on + strand, within CA265_RS20535 at 5082.213 kb on - strand, within CA265_RS20535 at 5082.313 kb on + strand, within CA265_RS20535 at 5082.314 kb on - strand, within CA265_RS20535 at 5082.314 kb on - strand, within CA265_RS20535 at 5082.319 kb on - strand, within CA265_RS20535 at 5082.354 kb on + strand, within CA265_RS20535
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,080,348 - +0.9 5,080,356 + +0.1 5,080,356 + +0.5 5,080,356 + +0.4 5,080,357 - -1.2 5,080,376 + -0.7 5,080,377 - +0.3 5,080,377 - -0.7 5,080,382 - -1.4 5,080,387 - +0.6 5,080,395 + -0.9 5,080,395 + -0.9 5,080,472 - +0.3 5,080,475 - +0.3 5,080,483 - +0.1 5,080,528 + -0.4 5,080,528 + -0.1 5,080,705 + CA265_RS20520 0.27 +0.3 5,080,706 - CA265_RS20520 0.27 +0.6 5,080,706 - CA265_RS20520 0.27 -0.6 5,080,706 - CA265_RS20520 0.27 +0.3 5,080,706 - CA265_RS20520 0.27 +0.1 5,080,715 - CA265_RS20520 0.28 +0.5 5,080,786 + CA265_RS20520 0.37 -0.2 5,080,826 - CA265_RS20520 0.42 -1.6 5,080,827 + CA265_RS20520 0.42 +0.1 5,080,828 - CA265_RS20520 0.42 -0.4 5,080,828 - CA265_RS20520 0.42 +0.4 5,080,829 + CA265_RS20520 0.42 +1.3 5,080,829 + CA265_RS20520 0.42 +0.6 5,080,849 - CA265_RS20520 0.45 +0.7 5,080,925 - CA265_RS20520 0.54 +0.4 5,081,023 + CA265_RS20520 0.66 -2.1 5,081,159 - CA265_RS20520 0.82 +0.1 5,081,163 - CA265_RS20520 0.83 -1.4 5,081,185 - CA265_RS20520 0.86 +0.3 5,081,197 + CA265_RS20520 0.87 -0.7 5,081,197 + CA265_RS20520 0.87 +0.6 5,081,252 - -0.0 5,081,252 - +0.2 5,081,260 + -0.2 5,081,292 + +0.4 5,081,292 + -0.4 5,081,292 + -1.2 5,081,292 + -1.5 5,081,295 + +0.3 5,081,302 + +0.3 5,081,303 - -1.4 5,081,521 + CA265_RS20525 0.86 +0.9 5,081,521 + CA265_RS20525 0.86 +0.6 5,081,522 - CA265_RS20525 0.86 -0.9 5,081,566 + +0.1 5,081,744 + CA265_RS20530 0.81 +0.6 5,081,770 + -0.9 5,081,770 + -0.7 5,081,800 + -1.7 5,081,814 + +0.0 5,081,858 + -2.1 5,081,864 + -0.8 5,081,891 + -0.7 5,081,891 + -1.2 5,081,893 + +0.1 5,081,894 - +0.3 5,081,902 + -0.8 5,081,902 + +0.2 5,081,902 + +1.0 5,081,903 - -1.4 5,081,903 - +0.3 5,081,907 + -0.6 5,081,915 + -0.0 5,081,966 - -0.1 5,081,966 - -0.2 5,082,031 - -0.4 5,082,111 - CA265_RS20535 0.26 -0.7 5,082,212 + CA265_RS20535 0.50 -0.3 5,082,213 - CA265_RS20535 0.50 +0.5 5,082,313 + CA265_RS20535 0.73 +0.6 5,082,314 - CA265_RS20535 0.73 -0.5 5,082,314 - CA265_RS20535 0.73 -1.4 5,082,319 - CA265_RS20535 0.74 +0.9 5,082,354 + CA265_RS20535 0.82 -0.2
Or see this region's nucleotide sequence