Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19930 and CA265_RS19935 are separated by 90 nucleotides CA265_RS19935 and CA265_RS19940 are separated by 68 nucleotides CA265_RS19940 and CA265_RS19945 are separated by 173 nucleotides CA265_RS19945 and CA265_RS19950 are separated by 46 nucleotides
CA265_RS19930: CA265_RS19930 - hypothetical protein, at 4,935,058 to 4,935,687
_RS19930
CA265_RS19935: CA265_RS19935 - hypothetical protein, at 4,935,778 to 4,936,323
_RS19935
CA265_RS19940: CA265_RS19940 - hypothetical protein, at 4,936,392 to 4,937,648
_RS19940
CA265_RS19945: CA265_RS19945 - hypothetical protein, at 4,937,822 to 4,938,295
_RS19945
CA265_RS19950: CA265_RS19950 - RNA polymerase subunit sigma-24, at 4,938,342 to 4,938,902
_RS19950
Position (kb) 4936
4937
4938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4935.490 kb on - strand, within CA265_RS19930 at 4935.525 kb on + strand, within CA265_RS19930 at 4935.526 kb on - strand, within CA265_RS19930 at 4935.564 kb on + strand, within CA265_RS19930 at 4935.692 kb on + strand at 4935.729 kb on - strand at 4935.749 kb on - strand at 4935.779 kb on + strand at 4935.803 kb on - strand at 4935.859 kb on - strand, within CA265_RS19935 at 4935.859 kb on - strand, within CA265_RS19935 at 4935.925 kb on - strand, within CA265_RS19935 at 4935.928 kb on - strand, within CA265_RS19935 at 4935.977 kb on + strand, within CA265_RS19935 at 4936.058 kb on + strand, within CA265_RS19935 at 4936.059 kb on - strand, within CA265_RS19935 at 4936.078 kb on + strand, within CA265_RS19935 at 4936.079 kb on - strand, within CA265_RS19935 at 4936.099 kb on - strand, within CA265_RS19935 at 4936.162 kb on - strand, within CA265_RS19935 at 4936.309 kb on - strand at 4936.425 kb on - strand at 4936.432 kb on - strand at 4936.490 kb on + strand at 4936.523 kb on - strand, within CA265_RS19940 at 4936.527 kb on - strand, within CA265_RS19940 at 4936.527 kb on - strand, within CA265_RS19940 at 4936.537 kb on + strand, within CA265_RS19940 at 4936.596 kb on + strand, within CA265_RS19940 at 4936.596 kb on + strand, within CA265_RS19940 at 4936.596 kb on + strand, within CA265_RS19940 at 4936.600 kb on + strand, within CA265_RS19940 at 4936.600 kb on + strand, within CA265_RS19940 at 4936.600 kb on + strand, within CA265_RS19940 at 4936.601 kb on - strand, within CA265_RS19940 at 4936.663 kb on + strand, within CA265_RS19940 at 4936.663 kb on + strand, within CA265_RS19940 at 4936.702 kb on - strand, within CA265_RS19940 at 4936.754 kb on + strand, within CA265_RS19940 at 4936.755 kb on - strand, within CA265_RS19940 at 4936.758 kb on + strand, within CA265_RS19940 at 4936.759 kb on - strand, within CA265_RS19940 at 4936.768 kb on + strand, within CA265_RS19940 at 4936.787 kb on + strand, within CA265_RS19940 at 4936.788 kb on - strand, within CA265_RS19940 at 4936.802 kb on + strand, within CA265_RS19940 at 4936.862 kb on + strand, within CA265_RS19940 at 4936.862 kb on + strand, within CA265_RS19940 at 4936.867 kb on - strand, within CA265_RS19940 at 4936.879 kb on + strand, within CA265_RS19940 at 4936.933 kb on + strand, within CA265_RS19940 at 4936.933 kb on + strand, within CA265_RS19940 at 4936.933 kb on + strand, within CA265_RS19940 at 4936.933 kb on + strand, within CA265_RS19940 at 4936.944 kb on - strand, within CA265_RS19940 at 4936.944 kb on - strand, within CA265_RS19940 at 4936.950 kb on + strand, within CA265_RS19940 at 4936.987 kb on + strand, within CA265_RS19940 at 4937.054 kb on - strand, within CA265_RS19940 at 4937.057 kb on + strand, within CA265_RS19940 at 4937.061 kb on + strand, within CA265_RS19940 at 4937.061 kb on + strand, within CA265_RS19940 at 4937.062 kb on - strand, within CA265_RS19940 at 4937.062 kb on - strand, within CA265_RS19940 at 4937.062 kb on - strand, within CA265_RS19940 at 4937.071 kb on - strand, within CA265_RS19940 at 4937.071 kb on - strand, within CA265_RS19940 at 4937.096 kb on - strand, within CA265_RS19940 at 4937.139 kb on + strand, within CA265_RS19940 at 4937.149 kb on + strand, within CA265_RS19940 at 4937.186 kb on + strand, within CA265_RS19940 at 4937.186 kb on + strand, within CA265_RS19940 at 4937.187 kb on - strand, within CA265_RS19940 at 4937.187 kb on - strand, within CA265_RS19940 at 4937.188 kb on + strand, within CA265_RS19940 at 4937.188 kb on + strand, within CA265_RS19940 at 4937.188 kb on + strand, within CA265_RS19940 at 4937.189 kb on - strand, within CA265_RS19940 at 4937.189 kb on - strand, within CA265_RS19940 at 4937.189 kb on - strand, within CA265_RS19940 at 4937.190 kb on + strand, within CA265_RS19940 at 4937.198 kb on - strand, within CA265_RS19940 at 4937.208 kb on + strand, within CA265_RS19940 at 4937.366 kb on + strand, within CA265_RS19940 at 4937.366 kb on + strand, within CA265_RS19940 at 4937.367 kb on - strand, within CA265_RS19940 at 4937.367 kb on - strand, within CA265_RS19940 at 4937.375 kb on + strand, within CA265_RS19940 at 4937.378 kb on + strand, within CA265_RS19940 at 4937.379 kb on - strand, within CA265_RS19940 at 4937.426 kb on + strand, within CA265_RS19940 at 4937.465 kb on + strand, within CA265_RS19940 at 4937.466 kb on - strand, within CA265_RS19940 at 4937.527 kb on + strand at 4937.528 kb on - strand at 4937.583 kb on + strand at 4937.583 kb on + strand at 4937.583 kb on + strand at 4937.702 kb on - strand at 4937.761 kb on + strand at 4937.768 kb on + strand at 4937.774 kb on + strand at 4937.800 kb on + strand at 4937.843 kb on - strand at 4937.863 kb on + strand at 4937.864 kb on - strand at 4937.864 kb on - strand at 4937.870 kb on + strand, within CA265_RS19945 at 4937.871 kb on - strand, within CA265_RS19945 at 4937.897 kb on + strand, within CA265_RS19945 at 4937.917 kb on + strand, within CA265_RS19945 at 4938.074 kb on + strand, within CA265_RS19945 at 4938.075 kb on - strand, within CA265_RS19945 at 4938.075 kb on - strand, within CA265_RS19945 at 4938.155 kb on + strand, within CA265_RS19945 at 4938.156 kb on - strand, within CA265_RS19945 at 4938.160 kb on - strand, within CA265_RS19945 at 4938.170 kb on + strand, within CA265_RS19945 at 4938.190 kb on + strand, within CA265_RS19945 at 4938.190 kb on + strand, within CA265_RS19945 at 4938.403 kb on + strand, within CA265_RS19950 at 4938.403 kb on + strand, within CA265_RS19950 at 4938.404 kb on - strand, within CA265_RS19950 at 4938.464 kb on - strand, within CA265_RS19950 at 4938.471 kb on + strand, within CA265_RS19950 at 4938.478 kb on + strand, within CA265_RS19950 at 4938.478 kb on + strand, within CA265_RS19950 at 4938.489 kb on + strand at 4938.499 kb on + strand, within CA265_RS19950 at 4938.547 kb on - strand, within CA265_RS19950 at 4938.573 kb on - strand, within CA265_RS19950 at 4938.605 kb on + strand, within CA265_RS19950 at 4938.610 kb on - strand, within CA265_RS19950 at 4938.623 kb on + strand, within CA265_RS19950 at 4938.638 kb on - strand, within CA265_RS19950
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,935,490 - CA265_RS19930 0.69 +0.5 4,935,525 + CA265_RS19930 0.74 -0.2 4,935,526 - CA265_RS19930 0.74 +0.9 4,935,564 + CA265_RS19930 0.80 +0.2 4,935,692 + +2.5 4,935,729 - -1.8 4,935,749 - +0.5 4,935,779 + +0.6 4,935,803 - -0.1 4,935,859 - CA265_RS19935 0.15 +0.5 4,935,859 - CA265_RS19935 0.15 +0.3 4,935,925 - CA265_RS19935 0.27 +0.1 4,935,928 - CA265_RS19935 0.27 +0.1 4,935,977 + CA265_RS19935 0.36 +0.7 4,936,058 + CA265_RS19935 0.51 -0.3 4,936,059 - CA265_RS19935 0.51 +0.3 4,936,078 + CA265_RS19935 0.55 -0.5 4,936,079 - CA265_RS19935 0.55 -0.1 4,936,099 - CA265_RS19935 0.59 -1.1 4,936,162 - CA265_RS19935 0.70 +0.7 4,936,309 - +0.0 4,936,425 - +1.2 4,936,432 - +0.1 4,936,490 + -0.9 4,936,523 - CA265_RS19940 0.10 +1.3 4,936,527 - CA265_RS19940 0.11 +0.4 4,936,527 - CA265_RS19940 0.11 -0.4 4,936,537 + CA265_RS19940 0.12 +1.5 4,936,596 + CA265_RS19940 0.16 +1.0 4,936,596 + CA265_RS19940 0.16 +0.2 4,936,596 + CA265_RS19940 0.16 +0.4 4,936,600 + CA265_RS19940 0.17 -0.2 4,936,600 + CA265_RS19940 0.17 +0.2 4,936,600 + CA265_RS19940 0.17 +1.2 4,936,601 - CA265_RS19940 0.17 +0.2 4,936,663 + CA265_RS19940 0.22 +0.5 4,936,663 + CA265_RS19940 0.22 -1.1 4,936,702 - CA265_RS19940 0.25 -0.3 4,936,754 + CA265_RS19940 0.29 -0.0 4,936,755 - CA265_RS19940 0.29 -0.0 4,936,758 + CA265_RS19940 0.29 +0.7 4,936,759 - CA265_RS19940 0.29 +1.8 4,936,768 + CA265_RS19940 0.30 +0.3 4,936,787 + CA265_RS19940 0.31 +0.7 4,936,788 - CA265_RS19940 0.32 -0.1 4,936,802 + CA265_RS19940 0.33 +1.1 4,936,862 + CA265_RS19940 0.37 -2.3 4,936,862 + CA265_RS19940 0.37 +0.9 4,936,867 - CA265_RS19940 0.38 +1.4 4,936,879 + CA265_RS19940 0.39 +0.9 4,936,933 + CA265_RS19940 0.43 -0.1 4,936,933 + CA265_RS19940 0.43 -0.1 4,936,933 + CA265_RS19940 0.43 +0.6 4,936,933 + CA265_RS19940 0.43 -0.1 4,936,944 - CA265_RS19940 0.44 +0.3 4,936,944 - CA265_RS19940 0.44 +0.6 4,936,950 + CA265_RS19940 0.44 +0.7 4,936,987 + CA265_RS19940 0.47 +0.7 4,937,054 - CA265_RS19940 0.53 -2.0 4,937,057 + CA265_RS19940 0.53 +0.3 4,937,061 + CA265_RS19940 0.53 +0.8 4,937,061 + CA265_RS19940 0.53 +0.6 4,937,062 - CA265_RS19940 0.53 -0.1 4,937,062 - CA265_RS19940 0.53 +0.3 4,937,062 - CA265_RS19940 0.53 +0.7 4,937,071 - CA265_RS19940 0.54 -0.1 4,937,071 - CA265_RS19940 0.54 +0.6 4,937,096 - CA265_RS19940 0.56 -2.1 4,937,139 + CA265_RS19940 0.59 +0.2 4,937,149 + CA265_RS19940 0.60 -0.8 4,937,186 + CA265_RS19940 0.63 +0.8 4,937,186 + CA265_RS19940 0.63 +1.6 4,937,187 - CA265_RS19940 0.63 +0.6 4,937,187 - CA265_RS19940 0.63 +0.9 4,937,188 + CA265_RS19940 0.63 -0.5 4,937,188 + CA265_RS19940 0.63 -0.0 4,937,188 + CA265_RS19940 0.63 +0.6 4,937,189 - CA265_RS19940 0.63 -0.5 4,937,189 - CA265_RS19940 0.63 -0.1 4,937,189 - CA265_RS19940 0.63 -0.3 4,937,190 + CA265_RS19940 0.63 +0.3 4,937,198 - CA265_RS19940 0.64 -0.2 4,937,208 + CA265_RS19940 0.65 +0.3 4,937,366 + CA265_RS19940 0.77 +1.0 4,937,366 + CA265_RS19940 0.77 -1.1 4,937,367 - CA265_RS19940 0.78 +0.3 4,937,367 - CA265_RS19940 0.78 -1.3 4,937,375 + CA265_RS19940 0.78 -0.2 4,937,378 + CA265_RS19940 0.78 +0.3 4,937,379 - CA265_RS19940 0.79 +0.3 4,937,426 + CA265_RS19940 0.82 +0.6 4,937,465 + CA265_RS19940 0.85 +0.9 4,937,466 - CA265_RS19940 0.85 +0.2 4,937,527 + +1.6 4,937,528 - +0.4 4,937,583 + +0.8 4,937,583 + -1.9 4,937,583 + +0.9 4,937,702 - -0.8 4,937,761 + +2.2 4,937,768 + +1.1 4,937,774 + +0.7 4,937,800 + -0.4 4,937,843 - +0.9 4,937,863 + +0.8 4,937,864 - +0.6 4,937,864 - +0.2 4,937,870 + CA265_RS19945 0.10 +0.4 4,937,871 - CA265_RS19945 0.10 -0.9 4,937,897 + CA265_RS19945 0.16 +0.0 4,937,917 + CA265_RS19945 0.20 -0.2 4,938,074 + CA265_RS19945 0.53 +1.0 4,938,075 - CA265_RS19945 0.53 -0.0 4,938,075 - CA265_RS19945 0.53 -0.7 4,938,155 + CA265_RS19945 0.70 -0.3 4,938,156 - CA265_RS19945 0.70 -1.7 4,938,160 - CA265_RS19945 0.71 +0.5 4,938,170 + CA265_RS19945 0.73 +0.2 4,938,190 + CA265_RS19945 0.78 +0.2 4,938,190 + CA265_RS19945 0.78 -0.8 4,938,403 + CA265_RS19950 0.11 -0.1 4,938,403 + CA265_RS19950 0.11 -0.9 4,938,404 - CA265_RS19950 0.11 -0.5 4,938,464 - CA265_RS19950 0.22 -0.2 4,938,471 + CA265_RS19950 0.23 -1.8 4,938,478 + CA265_RS19950 0.24 -0.5 4,938,478 + CA265_RS19950 0.24 +0.2 4,938,489 + +0.3 4,938,499 + CA265_RS19950 0.28 -0.2 4,938,547 - CA265_RS19950 0.37 -0.3 4,938,573 - CA265_RS19950 0.41 -0.8 4,938,605 + CA265_RS19950 0.47 -0.1 4,938,610 - CA265_RS19950 0.48 -0.2 4,938,623 + CA265_RS19950 0.50 -0.4 4,938,638 - CA265_RS19950 0.53 -0.6
Or see this region's nucleotide sequence