Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19585 and CA265_RS19590 are separated by 185 nucleotides CA265_RS19590 and CA265_RS19595 are separated by 110 nucleotides CA265_RS19595 and CA265_RS19600 are separated by 201 nucleotides
CA265_RS19585: CA265_RS19585 - pyruvate dehydrogenase, at 4,855,144 to 4,856,832
_RS19585
CA265_RS19590: CA265_RS19590 - hypothetical protein, at 4,857,018 to 4,857,296
_RS19590
CA265_RS19595: CA265_RS19595 - GxxExxY protein, at 4,857,407 to 4,857,784
_RS19595
CA265_RS19600: CA265_RS19600 - hypothetical protein, at 4,857,986 to 4,858,537
_RS19600
Position (kb) 4857
4858 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4856.825 kb on + strand at 4856.870 kb on + strand at 4856.875 kb on - strand at 4856.954 kb on + strand at 4857.036 kb on - strand at 4857.038 kb on + strand at 4857.044 kb on + strand at 4857.044 kb on + strand at 4857.100 kb on - strand, within CA265_RS19590 at 4857.110 kb on - strand, within CA265_RS19590 at 4857.125 kb on - strand, within CA265_RS19590 at 4857.270 kb on + strand at 4857.271 kb on - strand at 4857.272 kb on + strand at 4857.357 kb on + strand at 4857.358 kb on - strand at 4857.405 kb on + strand at 4857.502 kb on - strand, within CA265_RS19595 at 4857.505 kb on + strand, within CA265_RS19595 at 4857.506 kb on - strand, within CA265_RS19595 at 4857.524 kb on + strand, within CA265_RS19595 at 4857.542 kb on + strand, within CA265_RS19595 at 4857.563 kb on + strand, within CA265_RS19595 at 4857.575 kb on + strand, within CA265_RS19595 at 4857.578 kb on + strand, within CA265_RS19595 at 4857.601 kb on + strand, within CA265_RS19595 at 4857.606 kb on - strand, within CA265_RS19595 at 4857.612 kb on - strand, within CA265_RS19595 at 4857.613 kb on + strand, within CA265_RS19595 at 4857.632 kb on + strand, within CA265_RS19595 at 4857.678 kb on + strand, within CA265_RS19595 at 4857.723 kb on - strand, within CA265_RS19595 at 4857.728 kb on - strand, within CA265_RS19595 at 4857.795 kb on - strand at 4857.803 kb on - strand at 4857.825 kb on + strand at 4857.846 kb on - strand at 4857.886 kb on + strand at 4857.956 kb on + strand at 4858.093 kb on + strand, within CA265_RS19600 at 4858.158 kb on - strand, within CA265_RS19600 at 4858.160 kb on - strand, within CA265_RS19600 at 4858.160 kb on - strand, within CA265_RS19600 at 4858.160 kb on - strand, within CA265_RS19600 at 4858.173 kb on + strand, within CA265_RS19600 at 4858.180 kb on + strand, within CA265_RS19600 at 4858.199 kb on + strand, within CA265_RS19600 at 4858.231 kb on - strand, within CA265_RS19600 at 4858.252 kb on - strand, within CA265_RS19600 at 4858.252 kb on - strand, within CA265_RS19600 at 4858.279 kb on + strand, within CA265_RS19600 at 4858.280 kb on - strand, within CA265_RS19600
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,856,825 + -2.4 4,856,870 + -0.8 4,856,875 - -0.9 4,856,954 + -0.4 4,857,036 - -2.7 4,857,038 + -0.6 4,857,044 + -0.6 4,857,044 + +0.0 4,857,100 - CA265_RS19590 0.29 +0.1 4,857,110 - CA265_RS19590 0.33 +0.3 4,857,125 - CA265_RS19590 0.38 +0.7 4,857,270 + -1.1 4,857,271 - +1.1 4,857,272 + -0.5 4,857,357 + -0.4 4,857,358 - +0.0 4,857,405 + +0.5 4,857,502 - CA265_RS19595 0.25 -0.1 4,857,505 + CA265_RS19595 0.26 +1.9 4,857,506 - CA265_RS19595 0.26 -0.9 4,857,524 + CA265_RS19595 0.31 -1.2 4,857,542 + CA265_RS19595 0.36 +0.1 4,857,563 + CA265_RS19595 0.41 +0.2 4,857,575 + CA265_RS19595 0.44 -0.6 4,857,578 + CA265_RS19595 0.45 +0.2 4,857,601 + CA265_RS19595 0.51 -1.4 4,857,606 - CA265_RS19595 0.53 +0.9 4,857,612 - CA265_RS19595 0.54 +0.6 4,857,613 + CA265_RS19595 0.54 +0.2 4,857,632 + CA265_RS19595 0.60 +1.1 4,857,678 + CA265_RS19595 0.72 +1.1 4,857,723 - CA265_RS19595 0.84 -0.0 4,857,728 - CA265_RS19595 0.85 -0.7 4,857,795 - +0.3 4,857,803 - -0.6 4,857,825 + -0.6 4,857,846 - -0.6 4,857,886 + -1.6 4,857,956 + +0.1 4,858,093 + CA265_RS19600 0.19 -0.7 4,858,158 - CA265_RS19600 0.31 +0.5 4,858,160 - CA265_RS19600 0.32 -0.4 4,858,160 - CA265_RS19600 0.32 +0.3 4,858,160 - CA265_RS19600 0.32 -0.7 4,858,173 + CA265_RS19600 0.34 +0.2 4,858,180 + CA265_RS19600 0.35 -0.5 4,858,199 + CA265_RS19600 0.39 +0.8 4,858,231 - CA265_RS19600 0.44 -0.2 4,858,252 - CA265_RS19600 0.48 -0.2 4,858,252 - CA265_RS19600 0.48 -0.2 4,858,279 + CA265_RS19600 0.53 +0.9 4,858,280 - CA265_RS19600 0.53 -0.1
Or see this region's nucleotide sequence