Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19140

Experiment: R2A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS19130 and CA265_RS19135 are separated by 357 nucleotidesCA265_RS19135 and CA265_RS19140 are separated by 83 nucleotidesCA265_RS19140 and CA265_RS19145 are separated by 255 nucleotides CA265_RS19130: CA265_RS19130 - 23S ribosomal RNA, at 4,752,409 to 4,755,288 _RS19130 CA265_RS19135: CA265_RS19135 - tRNA-Ala, at 4,755,646 to 4,755,722 _RS19135 CA265_RS19140: CA265_RS19140 - tRNA-Ile, at 4,755,806 to 4,755,880 _RS19140 CA265_RS19145: CA265_RS19145 - 16S ribosomal RNA, at 4,756,136 to 4,757,656 _RS19145 Position (kb) 4755 4756Strain fitness (log2 ratio) -1 0 1 2at 4755.619 kb on - strandat 4755.740 kb on + strandat 4755.843 kb on - strand, within CA265_RS19140at 4756.073 kb on - strandat 4756.078 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A
remove
4,755,619 - -0.2
4,755,740 + +2.1
4,755,843 - CA265_RS19140 0.49 +0.3
4,756,073 - +1.3
4,756,078 - +0.6

Or see this region's nucleotide sequence