Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19095 and CA265_RS19100 are separated by 73 nucleotides CA265_RS19100 and CA265_RS19105 are separated by 121 nucleotides CA265_RS19105 and CA265_RS19110 are separated by 27 nucleotides
CA265_RS19095: CA265_RS19095 - DNA-binding transcriptional regulator, at 4,747,454 to 4,748,143
_RS19095
CA265_RS19100: CA265_RS19100 - damage-inducible protein DinB, at 4,748,217 to 4,748,777
_RS19100
CA265_RS19105: CA265_RS19105 - hypothetical protein, at 4,748,899 to 4,749,420
_RS19105
CA265_RS19110: CA265_RS19110 - 23S rRNA pseudouridine synthase F, at 4,749,448 to 4,750,422
_RS19110
Position (kb) 4748
4749
4750 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4747.931 kb on - strand, within CA265_RS19095 at 4747.988 kb on - strand, within CA265_RS19095 at 4748.021 kb on - strand, within CA265_RS19095 at 4748.148 kb on - strand at 4748.280 kb on - strand, within CA265_RS19100 at 4748.288 kb on + strand, within CA265_RS19100 at 4748.299 kb on + strand, within CA265_RS19100 at 4748.490 kb on + strand, within CA265_RS19100 at 4748.490 kb on + strand, within CA265_RS19100 at 4748.491 kb on - strand, within CA265_RS19100 at 4748.608 kb on + strand, within CA265_RS19100 at 4748.709 kb on + strand, within CA265_RS19100 at 4748.710 kb on - strand, within CA265_RS19100 at 4748.888 kb on + strand at 4748.956 kb on + strand, within CA265_RS19105 at 4748.957 kb on - strand, within CA265_RS19105 at 4748.961 kb on + strand, within CA265_RS19105 at 4749.024 kb on + strand, within CA265_RS19105 at 4749.047 kb on + strand, within CA265_RS19105 at 4749.118 kb on - strand, within CA265_RS19105 at 4749.183 kb on - strand, within CA265_RS19105 at 4749.251 kb on - strand, within CA265_RS19105 at 4749.418 kb on + strand at 4749.419 kb on - strand at 4749.527 kb on - strand at 4749.567 kb on + strand, within CA265_RS19110 at 4749.568 kb on - strand, within CA265_RS19110 at 4749.682 kb on - strand, within CA265_RS19110 at 4749.691 kb on - strand, within CA265_RS19110 at 4749.714 kb on + strand, within CA265_RS19110 at 4749.715 kb on - strand, within CA265_RS19110 at 4749.715 kb on - strand, within CA265_RS19110 at 4749.724 kb on + strand, within CA265_RS19110 at 4749.725 kb on - strand, within CA265_RS19110 at 4749.747 kb on - strand, within CA265_RS19110 at 4749.802 kb on - strand, within CA265_RS19110 at 4749.861 kb on - strand, within CA265_RS19110 at 4749.948 kb on + strand, within CA265_RS19110 at 4749.949 kb on - strand, within CA265_RS19110 at 4749.979 kb on - strand, within CA265_RS19110 at 4750.063 kb on - strand, within CA265_RS19110 at 4750.119 kb on + strand, within CA265_RS19110 at 4750.141 kb on - strand, within CA265_RS19110
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,747,931 - CA265_RS19095 0.69 +0.2 4,747,988 - CA265_RS19095 0.77 +2.0 4,748,021 - CA265_RS19095 0.82 +0.9 4,748,148 - +0.2 4,748,280 - CA265_RS19100 0.11 -0.0 4,748,288 + CA265_RS19100 0.13 +0.2 4,748,299 + CA265_RS19100 0.15 +0.3 4,748,490 + CA265_RS19100 0.49 +0.2 4,748,490 + CA265_RS19100 0.49 -1.0 4,748,491 - CA265_RS19100 0.49 +0.5 4,748,608 + CA265_RS19100 0.70 +1.0 4,748,709 + CA265_RS19100 0.88 +0.1 4,748,710 - CA265_RS19100 0.88 -0.2 4,748,888 + +0.1 4,748,956 + CA265_RS19105 0.11 +0.9 4,748,957 - CA265_RS19105 0.11 +0.2 4,748,961 + CA265_RS19105 0.12 +0.4 4,749,024 + CA265_RS19105 0.24 -0.2 4,749,047 + CA265_RS19105 0.28 +0.7 4,749,118 - CA265_RS19105 0.42 +0.6 4,749,183 - CA265_RS19105 0.54 +1.0 4,749,251 - CA265_RS19105 0.67 -0.6 4,749,418 + +0.6 4,749,419 - -1.5 4,749,527 - -1.8 4,749,567 + CA265_RS19110 0.12 -1.8 4,749,568 - CA265_RS19110 0.12 +0.0 4,749,682 - CA265_RS19110 0.24 -1.1 4,749,691 - CA265_RS19110 0.25 -0.1 4,749,714 + CA265_RS19110 0.27 +0.3 4,749,715 - CA265_RS19110 0.27 -0.6 4,749,715 - CA265_RS19110 0.27 +0.9 4,749,724 + CA265_RS19110 0.28 +1.5 4,749,725 - CA265_RS19110 0.28 -0.3 4,749,747 - CA265_RS19110 0.31 +0.1 4,749,802 - CA265_RS19110 0.36 +0.0 4,749,861 - CA265_RS19110 0.42 -2.9 4,749,948 + CA265_RS19110 0.51 -0.1 4,749,949 - CA265_RS19110 0.51 +0.0 4,749,979 - CA265_RS19110 0.54 -0.4 4,750,063 - CA265_RS19110 0.63 -0.4 4,750,119 + CA265_RS19110 0.69 -1.3 4,750,141 - CA265_RS19110 0.71 -1.1
Or see this region's nucleotide sequence