Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS18860 and CA265_RS18865 are separated by 379 nucleotides CA265_RS18865 and CA265_RS18870 are separated by 44 nucleotides CA265_RS18870 and CA265_RS18875 are separated by 99 nucleotides
CA265_RS18860: CA265_RS18860 - alpha-ketoacid dehydrogenase subunit beta, at 4,689,474 to 4,690,460
_RS18860
CA265_RS18865: CA265_RS18865 - hypothetical protein, at 4,690,840 to 4,691,415
_RS18865
CA265_RS18870: CA265_RS18870 - hypothetical protein, at 4,691,460 to 4,691,834
_RS18870
CA265_RS18875: CA265_RS18875 - hypothetical protein, at 4,691,934 to 4,693,274
_RS18875
Position (kb) 4691
4692 Strain fitness (log2 ratio) -2
-1
0
1 at 4690.478 kb on - strand at 4690.503 kb on + strand at 4690.660 kb on + strand at 4690.660 kb on + strand at 4690.755 kb on + strand at 4690.756 kb on - strand at 4690.848 kb on + strand at 4690.848 kb on + strand at 4690.888 kb on - strand at 4691.038 kb on - strand, within CA265_RS18865 at 4691.045 kb on + strand, within CA265_RS18865 at 4691.045 kb on + strand, within CA265_RS18865 at 4691.045 kb on + strand, within CA265_RS18865 at 4691.046 kb on - strand, within CA265_RS18865 at 4691.127 kb on + strand, within CA265_RS18865 at 4691.157 kb on - strand, within CA265_RS18865 at 4691.278 kb on - strand, within CA265_RS18865 at 4691.278 kb on - strand, within CA265_RS18865 at 4691.309 kb on - strand, within CA265_RS18865 at 4691.309 kb on - strand, within CA265_RS18865 at 4691.314 kb on + strand, within CA265_RS18865 at 4691.392 kb on + strand at 4691.493 kb on + strand at 4691.493 kb on + strand at 4691.493 kb on + strand at 4691.494 kb on - strand at 4691.494 kb on - strand at 4691.590 kb on - strand, within CA265_RS18870 at 4691.640 kb on + strand, within CA265_RS18870 at 4691.645 kb on + strand, within CA265_RS18870 at 4691.789 kb on + strand, within CA265_RS18870 at 4691.790 kb on - strand, within CA265_RS18870 at 4691.859 kb on - strand at 4691.905 kb on - strand at 4691.907 kb on + strand at 4691.950 kb on + strand at 4691.951 kb on - strand at 4691.966 kb on + strand at 4692.064 kb on + strand at 4692.126 kb on + strand, within CA265_RS18875 at 4692.127 kb on - strand, within CA265_RS18875 at 4692.129 kb on + strand, within CA265_RS18875 at 4692.179 kb on + strand, within CA265_RS18875 at 4692.394 kb on - strand, within CA265_RS18875 at 4692.498 kb on + strand, within CA265_RS18875 at 4692.518 kb on + strand, within CA265_RS18875 at 4692.597 kb on + strand, within CA265_RS18875 at 4692.659 kb on + strand, within CA265_RS18875 at 4692.745 kb on + strand, within CA265_RS18875 at 4692.747 kb on - strand, within CA265_RS18875 at 4692.767 kb on - strand, within CA265_RS18875 at 4692.767 kb on - strand, within CA265_RS18875 at 4692.780 kb on + strand, within CA265_RS18875 at 4692.819 kb on - strand, within CA265_RS18875
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,690,478 - +0.7 4,690,503 + -1.6 4,690,660 + +0.7 4,690,660 + +1.0 4,690,755 + +0.0 4,690,756 - +0.6 4,690,848 + +0.6 4,690,848 + -0.9 4,690,888 - +0.1 4,691,038 - CA265_RS18865 0.34 +1.2 4,691,045 + CA265_RS18865 0.36 +1.0 4,691,045 + CA265_RS18865 0.36 -1.8 4,691,045 + CA265_RS18865 0.36 +0.1 4,691,046 - CA265_RS18865 0.36 +1.0 4,691,127 + CA265_RS18865 0.50 -1.8 4,691,157 - CA265_RS18865 0.55 -0.4 4,691,278 - CA265_RS18865 0.76 -0.5 4,691,278 - CA265_RS18865 0.76 -0.8 4,691,309 - CA265_RS18865 0.81 +1.1 4,691,309 - CA265_RS18865 0.81 -0.7 4,691,314 + CA265_RS18865 0.82 -0.0 4,691,392 + -0.2 4,691,493 + -0.1 4,691,493 + -1.9 4,691,493 + +0.1 4,691,494 - -0.7 4,691,494 - -0.5 4,691,590 - CA265_RS18870 0.35 -0.2 4,691,640 + CA265_RS18870 0.48 -0.0 4,691,645 + CA265_RS18870 0.49 +0.7 4,691,789 + CA265_RS18870 0.88 +0.3 4,691,790 - CA265_RS18870 0.88 +0.7 4,691,859 - +0.1 4,691,905 - +0.1 4,691,907 + -0.4 4,691,950 + +0.4 4,691,951 - +0.0 4,691,966 + -1.4 4,692,064 + -0.5 4,692,126 + CA265_RS18875 0.14 -0.2 4,692,127 - CA265_RS18875 0.14 +0.6 4,692,129 + CA265_RS18875 0.15 -0.1 4,692,179 + CA265_RS18875 0.18 -0.3 4,692,394 - CA265_RS18875 0.34 +0.2 4,692,498 + CA265_RS18875 0.42 +0.2 4,692,518 + CA265_RS18875 0.44 -0.4 4,692,597 + CA265_RS18875 0.49 +0.3 4,692,659 + CA265_RS18875 0.54 -0.3 4,692,745 + CA265_RS18875 0.60 +1.0 4,692,747 - CA265_RS18875 0.61 -0.4 4,692,767 - CA265_RS18875 0.62 +0.5 4,692,767 - CA265_RS18875 0.62 +0.6 4,692,780 + CA265_RS18875 0.63 -0.3 4,692,819 - CA265_RS18875 0.66 +1.1
Or see this region's nucleotide sequence